Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.2■□□□□ 0.98
VCPP55072 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
VCPP55072 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.19■□□□□ 0.98
VCPP55072 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.19■□□□□ 0.98
VCPP55072 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.19■□□□□ 0.98
VCPP55072 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
VCPP55072 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VCPP55072 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.19■□□□□ 0.98
VCPP55072 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.19■□□□□ 0.98
VCPP55072 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
VCPP55072 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.18■□□□□ 0.98
VCPP55072 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCPP55072 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCPP55072 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VCPP55072 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCPP55072 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCPP55072 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCPP55072 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
VCPP55072 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.18■□□□□ 0.98
VCPP55072 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.18■□□□□ 0.98
VCPP55072 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
VCPP55072 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCPP55072 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VCPP55072 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.18■□□□□ 0.98
VCPP55072 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.18■□□□□ 0.98
VCPP55072 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
VCPP55072 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.18■□□□□ 0.98
VCPP55072 AL135905.2-201ENST00000584934 1404 ntBASIC21.18■□□□□ 0.98
VCPP55072 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VCPP55072 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.18■□□□□ 0.98
VCPP55072 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.18■□□□□ 0.98
VCPP55072 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.18■□□□□ 0.98
VCPP55072 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.18■□□□□ 0.98
VCPP55072 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.18■□□□□ 0.98
VCPP55072 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.18■□□□□ 0.98
VCPP55072 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
VCPP55072 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
VCPP55072 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.17■□□□□ 0.98
VCPP55072 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
VCPP55072 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 AC133681.1-201ENST00000465482 601 ntBASIC21.17■□□□□ 0.98
VCPP55072 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
VCPP55072 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.17■□□□□ 0.98
VCPP55072 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.17■□□□□ 0.98
VCPP55072 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.17■□□□□ 0.98
VCPP55072 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VCPP55072 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
VCPP55072 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.17■□□□□ 0.98
VCPP55072 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VCPP55072 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.16■□□□□ 0.98
VCPP55072 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
VCPP55072 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
VCPP55072 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.16■□□□□ 0.98
VCPP55072 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VCPP55072 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.16■□□□□ 0.98
VCPP55072 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 AC092865.7-201ENST00000641832 219 ntBASIC21.16■□□□□ 0.98
VCPP55072 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.16■□□□□ 0.98
VCPP55072 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
VCPP55072 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VCPP55072 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.16■□□□□ 0.98
VCPP55072 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.16■□□□□ 0.98
VCPP55072 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.15■□□□□ 0.98
VCPP55072 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.15■□□□□ 0.98
VCPP55072 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VCPP55072 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
VCPP55072 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms