Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.71■□□□□ 0.91
LIG3P49916 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
LIG3P49916 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 AC007613.1-201ENST00000572811 2597 ntBASIC20.71■□□□□ 0.91
LIG3P49916 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.71■□□□□ 0.91
LIG3P49916 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
LIG3P49916 AC020907.5-201ENST00000624372 1936 ntBASIC20.7■□□□□ 0.91
LIG3P49916 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.7■□□□□ 0.91
LIG3P49916 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 FZD10-202ENST00000539839 3282 ntBASIC20.7■□□□□ 0.9
LIG3P49916 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
LIG3P49916 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
LIG3P49916 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.7■□□□□ 0.9
LIG3P49916 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.7■□□□□ 0.9
LIG3P49916 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.7■□□□□ 0.9
LIG3P49916 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.7■□□□□ 0.9
LIG3P49916 FAM21FP-204ENST00000608637 956 ntBASIC20.7■□□□□ 0.9
LIG3P49916 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.7■□□□□ 0.9
LIG3P49916 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LIG3P49916 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.7■□□□□ 0.9
LIG3P49916 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIG3P49916 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
LIG3P49916 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
LIG3P49916 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.69■□□□□ 0.9
LIG3P49916 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
LIG3P49916 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LIG3P49916 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.69■□□□□ 0.9
LIG3P49916 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.69■□□□□ 0.9
LIG3P49916 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.69■□□□□ 0.9
LIG3P49916 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.69■□□□□ 0.9
LIG3P49916 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIG3P49916 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.69■□□□□ 0.9
LIG3P49916 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
LIG3P49916 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
LIG3P49916 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.68■□□□□ 0.9
LIG3P49916 AC007322.3-201ENST00000426526 701 ntBASIC20.68■□□□□ 0.9
LIG3P49916 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.68■□□□□ 0.9
LIG3P49916 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.68■□□□□ 0.9
LIG3P49916 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.68■□□□□ 0.9
LIG3P49916 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LIG3P49916 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LIG3P49916 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LIG3P49916 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 AC010980.2-201ENST00000587099 1412 ntBASIC20.68■□□□□ 0.9
LIG3P49916 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIG3P49916 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.68■□□□□ 0.9
LIG3P49916 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LIG3P49916 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LIG3P49916 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.67■□□□□ 0.9
LIG3P49916 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LIG3P49916 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 MIPEPP3-201ENST00000412105 444 ntBASIC20.67■□□□□ 0.9
LIG3P49916 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.67■□□□□ 0.9
LIG3P49916 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms