Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 AC011506.1-201ENST00000474329 610 ntBASIC19.97■□□□□ 0.79
TNFRSF4P43489 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 AL445228.2-201ENST00000605589 952 ntBASIC19.97■□□□□ 0.79
TNFRSF4P43489 AL590326.2-201ENST00000625139 305 ntBASIC19.97■□□□□ 0.79
TNFRSF4P43489 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.97■□□□□ 0.79
TNFRSF4P43489 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TNFRSF4P43489 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
TNFRSF4P43489 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TNFRSF4P43489 AL137013.1-201ENST00000432946 1228 ntBASIC19.96■□□□□ 0.79
TNFRSF4P43489 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.96■□□□□ 0.79
TNFRSF4P43489 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.96■□□□□ 0.79
TNFRSF4P43489 C2orf69P3-201ENST00000565542 1120 ntBASIC19.96■□□□□ 0.79
TNFRSF4P43489 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.96■□□□□ 0.79
TNFRSF4P43489 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.96■□□□□ 0.79
TNFRSF4P43489 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TNFRSF4P43489 LINC00565-201ENST00000562710 2331 ntBASIC19.96■□□□□ 0.79
TNFRSF4P43489 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
TNFRSF4P43489 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 SLC25A3P1-201ENST00000443844 931 ntBASIC19.95■□□□□ 0.78
TNFRSF4P43489 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.95■□□□□ 0.78
TNFRSF4P43489 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TNFRSF4P43489 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFRSF4P43489 AC073508.3-201ENST00000619697 1419 ntBASIC19.94■□□□□ 0.78
TNFRSF4P43489 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.94■□□□□ 0.78
TNFRSF4P43489 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.94■□□□□ 0.78
TNFRSF4P43489 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
TNFRSF4P43489 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.94■□□□□ 0.78
TNFRSF4P43489 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TNFRSF4P43489 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFRSF4P43489 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFRSF4P43489 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFRSF4P43489 TERF1P1-201ENST00000311003 1181 ntBASIC19.94■□□□□ 0.78
TNFRSF4P43489 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.94■□□□□ 0.78
TNFRSF4P43489 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.94■□□□□ 0.78
TNFRSF4P43489 AC097488.1-201ENST00000507834 756 ntBASIC19.94■□□□□ 0.78
TNFRSF4P43489 KRT18P35-201ENST00000510488 1269 ntBASIC19.94■□□□□ 0.78
TNFRSF4P43489 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFRSF4P43489 EGLN1P1-201ENST00000531623 762 ntBASIC19.94■□□□□ 0.78
TNFRSF4P43489 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TNFRSF4P43489 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
TNFRSF4P43489 AC130371.2-201ENST00000619443 611 ntBASIC19.94■□□□□ 0.78
TNFRSF4P43489 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TNFRSF4P43489 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.93■□□□□ 0.78
TNFRSF4P43489 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFRSF4P43489 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TNFRSF4P43489 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFRSF4P43489 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TNFRSF4P43489 TSPY14P-201ENST00000303979 915 ntBASIC19.93■□□□□ 0.78
TNFRSF4P43489 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TNFRSF4P43489 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.93■□□□□ 0.78
TNFRSF4P43489 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.93■□□□□ 0.78
TNFRSF4P43489 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
TNFRSF4P43489 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms