Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BDNFP23560 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
BDNFP23560 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
BDNFP23560 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.9■□□□□ 0.94
BDNFP23560 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.9■□□□□ 0.94
BDNFP23560 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.9■□□□□ 0.94
BDNFP23560 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.9■□□□□ 0.94
BDNFP23560 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BDNFP23560 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
BDNFP23560 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
BDNFP23560 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
BDNFP23560 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.89■□□□□ 0.93
BDNFP23560 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.89■□□□□ 0.93
BDNFP23560 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.89■□□□□ 0.93
BDNFP23560 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.89■□□□□ 0.93
BDNFP23560 AC012618.2-201ENST00000428058 849 ntBASIC20.89■□□□□ 0.93
BDNFP23560 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.89■□□□□ 0.93
BDNFP23560 RARRES2P10-201ENST00000564312 460 ntBASIC20.89■□□□□ 0.93
BDNFP23560 AC233702.5-201ENST00000584107 538 ntBASIC20.89■□□□□ 0.93
BDNFP23560 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
BDNFP23560 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
BDNFP23560 AC004264.1-201ENST00000608354 794 ntBASIC20.89■□□□□ 0.93
BDNFP23560 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BDNFP23560 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.89■□□□□ 0.93
BDNFP23560 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BDNFP23560 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BDNFP23560 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.89■□□□□ 0.93
BDNFP23560 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 AP006587.1-201ENST00000534129 1502 ntBASIC20.88■□□□□ 0.93
BDNFP23560 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
BDNFP23560 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.88■□□□□ 0.93
BDNFP23560 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.88■□□□□ 0.93
BDNFP23560 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
BDNFP23560 HTR7P1-201ENST00000538670 1336 ntBASIC20.88■□□□□ 0.93
BDNFP23560 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.88■□□□□ 0.93
BDNFP23560 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.88■□□□□ 0.93
BDNFP23560 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.88■□□□□ 0.93
BDNFP23560 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.88■□□□□ 0.93
BDNFP23560 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.88■□□□□ 0.93
BDNFP23560 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BDNFP23560 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
BDNFP23560 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.87■□□□□ 0.93
BDNFP23560 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
BDNFP23560 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
BDNFP23560 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
BDNFP23560 SNORA78-201ENST00000459373 127 ntBASIC20.87■□□□□ 0.93
BDNFP23560 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.87■□□□□ 0.93
BDNFP23560 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.87■□□□□ 0.93
BDNFP23560 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.87■□□□□ 0.93
BDNFP23560 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.87■□□□□ 0.93
BDNFP23560 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.87■□□□□ 0.93
BDNFP23560 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.87■□□□□ 0.93
BDNFP23560 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.87■□□□□ 0.93
BDNFP23560 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
BDNFP23560 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
BDNFP23560 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
BDNFP23560 AL135905.2-201ENST00000584934 1404 ntBASIC20.87■□□□□ 0.93
BDNFP23560 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.86■□□□□ 0.93
BDNFP23560 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BDNFP23560 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms