Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH3P20585 AC099778.1-201ENST00000568593 1911 ntBASIC19.7■□□□□ 0.74
MSH3P20585 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH3P20585 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH3P20585 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH3P20585 ESRRAP1-201ENST00000400596 1257 ntBASIC19.7■□□□□ 0.74
MSH3P20585 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
MSH3P20585 MIR4651-201ENST00000582622 73 ntBASIC19.7■□□□□ 0.74
MSH3P20585 AC120498.8-201ENST00000614275 531 ntBASIC19.7■□□□□ 0.74
MSH3P20585 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH3P20585 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
MSH3P20585 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MSH3P20585 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH3P20585 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.7■□□□□ 0.74
MSH3P20585 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH3P20585 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH3P20585 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
MSH3P20585 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.69■□□□□ 0.74
MSH3P20585 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.69■□□□□ 0.74
MSH3P20585 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.69■□□□□ 0.74
MSH3P20585 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.69■□□□□ 0.74
MSH3P20585 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.69■□□□□ 0.74
MSH3P20585 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH3P20585 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.69■□□□□ 0.74
MSH3P20585 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSH3P20585 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH3P20585 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH3P20585 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH3P20585 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH3P20585 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
MSH3P20585 RPS2P52-201ENST00000469610 820 ntBASIC19.68■□□□□ 0.74
MSH3P20585 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH3P20585 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.68■□□□□ 0.74
MSH3P20585 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH3P20585 AC008403.3-201ENST00000598924 454 ntBASIC19.68■□□□□ 0.74
MSH3P20585 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.68■□□□□ 0.74
MSH3P20585 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.68■□□□□ 0.74
MSH3P20585 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
MSH3P20585 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
MSH3P20585 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
MSH3P20585 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.67■□□□□ 0.74
MSH3P20585 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
MSH3P20585 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
MSH3P20585 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.67■□□□□ 0.74
MSH3P20585 KRT17P3-201ENST00000420566 1262 ntBASIC19.67■□□□□ 0.74
MSH3P20585 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.67■□□□□ 0.74
MSH3P20585 FAM201B-201ENST00000458407 597 ntBASIC19.67■□□□□ 0.74
MSH3P20585 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.67■□□□□ 0.74
MSH3P20585 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.67■□□□□ 0.74
MSH3P20585 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.67■□□□□ 0.74
MSH3P20585 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSH3P20585 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
MSH3P20585 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
MSH3P20585 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.66■□□□□ 0.74
MSH3P20585 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.66■□□□□ 0.74
MSH3P20585 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.66■□□□□ 0.74
MSH3P20585 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSH3P20585 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
MSH3P20585 POM121L13P-201ENST00000422362 380 ntBASIC19.66■□□□□ 0.74
MSH3P20585 POU5F1P3-201ENST00000428824 1078 ntBASIC19.66■□□□□ 0.74
MSH3P20585 TSPY20P-201ENST00000450910 630 ntBASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms