Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.63■□□□□ 0.89
HMGA1P17096 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HMGA1P17096 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.63■□□□□ 0.89
HMGA1P17096 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 AC133561.5-201ENST00000635547 218 ntBASIC20.63■□□□□ 0.89
HMGA1P17096 AC097493.4-201ENST00000641197 219 ntBASIC20.63■□□□□ 0.89
HMGA1P17096 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.63■□□□□ 0.89
HMGA1P17096 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGA1P17096 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.63■□□□□ 0.89
HMGA1P17096 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HMGA1P17096 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGA1P17096 AC079598.2-202ENST00000546624 1451 ntBASIC20.62■□□□□ 0.89
HMGA1P17096 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGA1P17096 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGA1P17096 KRT16P1-201ENST00000399124 1418 ntBASIC20.62■□□□□ 0.89
HMGA1P17096 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.62■□□□□ 0.89
HMGA1P17096 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
HMGA1P17096 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGA1P17096 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.62■□□□□ 0.89
HMGA1P17096 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.62■□□□□ 0.89
HMGA1P17096 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.62■□□□□ 0.89
HMGA1P17096 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGA1P17096 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGA1P17096 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HMGA1P17096 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGA1P17096 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.61■□□□□ 0.89
HMGA1P17096 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.61■□□□□ 0.89
HMGA1P17096 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.61■□□□□ 0.89
HMGA1P17096 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HMGA1P17096 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGA1P17096 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGA1P17096 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HMGA1P17096 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 MMP23A-201ENST00000234610 1017 ntBASIC20.6■□□□□ 0.89
HMGA1P17096 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGA1P17096 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 TUBB8P6-201ENST00000436895 1288 ntBASIC20.6■□□□□ 0.89
HMGA1P17096 AL445675.2-201ENST00000620291 557 ntBASIC20.6■□□□□ 0.89
HMGA1P17096 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGA1P17096 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
HMGA1P17096 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGA1P17096 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGA1P17096 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGA1P17096 AP005212.1-201ENST00000581547 1997 ntBASIC20.59■□□□□ 0.89
HMGA1P17096 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HMGA1P17096 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGA1P17096 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGA1P17096 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGA1P17096 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.59■□□□□ 0.89
HMGA1P17096 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.59■□□□□ 0.89
HMGA1P17096 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGA1P17096 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.59■□□□□ 0.89
HMGA1P17096 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.59■□□□□ 0.89
HMGA1P17096 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.59■□□□□ 0.89
HMGA1P17096 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGA1P17096 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGA1P17096 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGA1P17096 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGA1P17096 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGA1P17096 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGA1P17096 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGA1P17096 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.58■□□□□ 0.89
HMGA1P17096 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
HMGA1P17096 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.58■□□□□ 0.89
HMGA1P17096 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.58■□□□□ 0.89
HMGA1P17096 FAM210CP-201ENST00000445714 574 ntBASIC20.58■□□□□ 0.89
HMGA1P17096 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGA1P17096 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGA1P17096 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.58■□□□□ 0.89
HMGA1P17096 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HMGA1P17096 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGA1P17096 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.58■□□□□ 0.89
HMGA1P17096 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGA1P17096 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
HMGA1P17096 AP000525.1-201ENST00000608286 694 ntBASIC20.58■□□□□ 0.89
HMGA1P17096 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.58■□□□□ 0.89
HMGA1P17096 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.58■□□□□ 0.89
HMGA1P17096 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.58■□□□□ 0.89
HMGA1P17096 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGA1P17096 KRT8P9-201ENST00000558927 1449 ntBASIC20.58■□□□□ 0.88
HMGA1P17096 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGA1P17096 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms