Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CSB-PGBD3P0DP91 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
CSB-PGBD3P0DP91 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC26.33■■□□□ 1.81
CSB-PGBD3P0DP91 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
CSB-PGBD3P0DP91 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.8
CSB-PGBD3P0DP91 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 KRT18P16-201ENST00000510337 1294 ntBASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CSB-PGBD3P0DP91 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 AC018553.1-201ENST00000616682 1458 ntBASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 UPK3BP1-201ENST00000428678 509 ntBASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 CYGB-204ENST00000589342 815 ntTSL 3 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 FP700111.2-201ENST00000619190 1892 ntBASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC26.31■■□□□ 1.8
CSB-PGBD3P0DP91 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 LINC01238-205ENST00000567549 1107 ntBASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 AL358472.4-201ENST00000633140 710 ntBASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 KRT16P6-202ENST00000425692 1426 ntBASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CSB-PGBD3P0DP91 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 HIST1H2APS4-201ENST00000362070 348 ntBASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 AC063952.2-201ENST00000498792 1227 ntBASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 MED25-212ENST00000618715 1467 ntTSL 5 BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CSB-PGBD3P0DP91 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 ERF-202ENST00000440177 2032 ntTSL 2 BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 COPE-203ENST00000351079 907 ntTSL 2 BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 AC117947.1-201ENST00000427448 529 ntBASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 AC011298.2-201ENST00000617989 482 ntBASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 AC130371.2-201ENST00000619443 611 ntBASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
CSB-PGBD3P0DP91 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms