Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 KRT17P6-201ENST00000453795 1220 ntBASIC12.44□□□□□ -0.42
APOBP04114 UNC93B7-201ENST00000509439 705 ntBASIC12.44□□□□□ -0.42
APOBP04114 RN7SL510P-201ENST00000581311 263 ntBASIC12.44□□□□□ -0.42
APOBP04114 AC006538.3-201ENST00000612495 578 ntBASIC12.44□□□□□ -0.42
APOBP04114 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC12.44□□□□□ -0.42
APOBP04114 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
APOBP04114 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC12.44□□□□□ -0.42
APOBP04114 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
APOBP04114 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
APOBP04114 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC12.44□□□□□ -0.42
APOBP04114 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC12.44□□□□□ -0.42
APOBP04114 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.44□□□□□ -0.42
APOBP04114 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
APOBP04114 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
APOBP04114 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC12.44□□□□□ -0.42
APOBP04114 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
APOBP04114 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
APOBP04114 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
APOBP04114 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC12.44□□□□□ -0.42
APOBP04114 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
APOBP04114 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
APOBP04114 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
APOBP04114 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 AC092119.3-201ENST00000612618 583 ntBASIC12.43□□□□□ -0.42
APOBP04114 AC008622.2-201ENST00000617006 1229 ntBASIC12.43□□□□□ -0.42
APOBP04114 MIR2861-201ENST00000636310 90 ntBASIC12.43□□□□□ -0.42
APOBP04114 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
APOBP04114 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC12.43□□□□□ -0.42
APOBP04114 CNP-204ENST00000472031 1019 ntTSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC12.43□□□□□ -0.42
APOBP04114 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC12.43□□□□□ -0.42
APOBP04114 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC12.43□□□□□ -0.42
APOBP04114 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC12.43□□□□□ -0.42
APOBP04114 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC12.43□□□□□ -0.42
APOBP04114 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC12.43□□□□□ -0.42
APOBP04114 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC12.43□□□□□ -0.42
APOBP04114 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
APOBP04114 CR769767.2-201ENST00000622735 460 ntBASIC12.43□□□□□ -0.42
APOBP04114 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
APOBP04114 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC12.43□□□□□ -0.42
APOBP04114 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC12.42□□□□□ -0.42
APOBP04114 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC12.42□□□□□ -0.42
APOBP04114 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 AC104692.2-201ENST00000603054 253 ntBASIC12.42□□□□□ -0.42
APOBP04114 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 KRT8P45-201ENST00000414328 1447 ntBASIC12.42□□□□□ -0.42
APOBP04114 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
APOBP04114 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC12.42□□□□□ -0.42
APOBP04114 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
APOBP04114 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC12.42□□□□□ -0.42
APOBP04114 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC12.42□□□□□ -0.42
APOBP04114 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC12.42□□□□□ -0.42
APOBP04114 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC12.42□□□□□ -0.42
APOBP04114 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC12.42□□□□□ -0.42
APOBP04114 KRT8P20-201ENST00000423953 1409 ntBASIC12.42□□□□□ -0.42
APOBP04114 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
APOBP04114 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
APOBP04114 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
APOBP04114 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
APOBP04114 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC12.41□□□□□ -0.42
APOBP04114 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms