Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.8■□□□□ 0.6
PROM1O43490 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PROM1O43490 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PROM1O43490 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PROM1O43490 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PROM1O43490 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PROM1O43490 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.79■□□□□ 0.6
PROM1O43490 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PROM1O43490 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PROM1O43490 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.79■□□□□ 0.6
PROM1O43490 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.79■□□□□ 0.6
PROM1O43490 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.79■□□□□ 0.6
PROM1O43490 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.79■□□□□ 0.6
PROM1O43490 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.79■□□□□ 0.6
PROM1O43490 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.79■□□□□ 0.6
PROM1O43490 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.79■□□□□ 0.6
PROM1O43490 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.79■□□□□ 0.6
PROM1O43490 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.79■□□□□ 0.6
PROM1O43490 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.79■□□□□ 0.6
PROM1O43490 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PROM1O43490 AC006557.6-201ENST00000623071 864 ntBASIC18.79■□□□□ 0.6
PROM1O43490 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
PROM1O43490 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.79■□□□□ 0.6
PROM1O43490 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.79■□□□□ 0.6
PROM1O43490 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.79■□□□□ 0.6
PROM1O43490 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.79■□□□□ 0.6
PROM1O43490 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.79■□□□□ 0.6
PROM1O43490 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.78■□□□□ 0.6
PROM1O43490 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.78■□□□□ 0.6
PROM1O43490 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.78■□□□□ 0.6
PROM1O43490 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
PROM1O43490 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.78■□□□□ 0.6
PROM1O43490 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.78■□□□□ 0.6
PROM1O43490 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.78■□□□□ 0.6
PROM1O43490 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.78■□□□□ 0.6
PROM1O43490 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 TMEM179-206ENST00000616017 1645 ntBASIC18.78■□□□□ 0.6
PROM1O43490 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PROM1O43490 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
PROM1O43490 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PROM1O43490 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.77■□□□□ 0.6
PROM1O43490 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PROM1O43490 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.77■□□□□ 0.6
PROM1O43490 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PROM1O43490 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.77■□□□□ 0.6
PROM1O43490 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
PROM1O43490 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PROM1O43490 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
PROM1O43490 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.76■□□□□ 0.59
PROM1O43490 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PROM1O43490 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PROM1O43490 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PROM1O43490 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.76■□□□□ 0.59
PROM1O43490 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PROM1O43490 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.76■□□□□ 0.59
PROM1O43490 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.76■□□□□ 0.59
PROM1O43490 PHGDH-210ENST00000641115 1638 ntBASIC18.76■□□□□ 0.59
PROM1O43490 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.76■□□□□ 0.59
PROM1O43490 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PROM1O43490 TSPY20P-201ENST00000450910 630 ntBASIC18.76■□□□□ 0.59
PROM1O43490 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.76■□□□□ 0.59
PROM1O43490 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PROM1O43490 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PROM1O43490 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PROM1O43490 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PROM1O43490 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PROM1O43490 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
PROM1O43490 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PROM1O43490 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PROM1O43490 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PROM1O43490 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PROM1O43490 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.75■□□□□ 0.59
PROM1O43490 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
PROM1O43490 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PROM1O43490 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PROM1O43490 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.75■□□□□ 0.59
PROM1O43490 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PROM1O43490 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.75■□□□□ 0.59
PROM1O43490 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms