Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
CLDN3O15551 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.66■■□□□ 1.06
CLDN3O15551 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 AL359736.2-201ENST00000621992 437 ntBASIC21.66■■□□□ 1.06
CLDN3O15551 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
CLDN3O15551 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CLDN3O15551 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
CLDN3O15551 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.65■■□□□ 1.06
CLDN3O15551 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.65■■□□□ 1.06
CLDN3O15551 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.65■■□□□ 1.06
CLDN3O15551 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CLDN3O15551 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.65■■□□□ 1.06
CLDN3O15551 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.65■■□□□ 1.06
CLDN3O15551 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.65■■□□□ 1.06
CLDN3O15551 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CLDN3O15551 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.65■■□□□ 1.06
CLDN3O15551 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 PHGDH-210ENST00000641115 1638 ntBASIC21.65■■□□□ 1.06
CLDN3O15551 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.65■■□□□ 1.06
CLDN3O15551 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDN3O15551 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CLDN3O15551 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLDN3O15551 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CLDN3O15551 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CLDN3O15551 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
CLDN3O15551 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLDN3O15551 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CLDN3O15551 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDN3O15551 AC239809.2-201ENST00000415381 517 ntBASIC21.64■■□□□ 1.05
CLDN3O15551 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.64■■□□□ 1.05
CLDN3O15551 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.64■■□□□ 1.05
CLDN3O15551 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.64■■□□□ 1.05
CLDN3O15551 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.64■■□□□ 1.05
CLDN3O15551 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.64■■□□□ 1.05
CLDN3O15551 FAM197Y4-202ENST00000622692 608 ntBASIC21.64■■□□□ 1.05
CLDN3O15551 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDN3O15551 AC116351.2-201ENST00000606540 1585 ntBASIC21.64■■□□□ 1.05
CLDN3O15551 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CLDN3O15551 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.64■■□□□ 1.05
CLDN3O15551 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDN3O15551 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDN3O15551 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 AC099778.1-201ENST00000568593 1911 ntBASIC21.63■■□□□ 1.05
CLDN3O15551 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.63■■□□□ 1.05
CLDN3O15551 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CLDN3O15551 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CLDN3O15551 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.63■■□□□ 1.05
CLDN3O15551 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CLDN3O15551 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.63■■□□□ 1.05
CLDN3O15551 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CLDN3O15551 AC124016.1-201ENST00000609552 612 ntBASIC21.63■■□□□ 1.05
CLDN3O15551 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDN3O15551 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CLDN3O15551 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLDN3O15551 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.62■■□□□ 1.05
CLDN3O15551 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.62■■□□□ 1.05
CLDN3O15551 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLDN3O15551 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLDN3O15551 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.62■■□□□ 1.05
CLDN3O15551 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.62■■□□□ 1.05
CLDN3O15551 AC133681.1-201ENST00000465482 601 ntBASIC21.62■■□□□ 1.05
CLDN3O15551 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.62■■□□□ 1.05
CLDN3O15551 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLDN3O15551 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLDN3O15551 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLDN3O15551 AC018553.1-201ENST00000616682 1458 ntBASIC21.62■■□□□ 1.05
CLDN3O15551 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms