Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SDCBPO00560 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.81■□□□□ 0.28
SDCBPO00560 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.81■□□□□ 0.28
SDCBPO00560 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SDCBPO00560 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.81■□□□□ 0.28
SDCBPO00560 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SDCBPO00560 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC16.81■□□□□ 0.28
SDCBPO00560 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.81■□□□□ 0.28
SDCBPO00560 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SDCBPO00560 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC16.81■□□□□ 0.28
SDCBPO00560 AL591742.1-201ENST00000604433 565 ntBASIC16.81■□□□□ 0.28
SDCBPO00560 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 ANKRD20A6P-201ENST00000618763 204 ntBASIC16.81■□□□□ 0.28
SDCBPO00560 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 AC013268.1-206ENST00000638368 961 ntBASIC16.81■□□□□ 0.28
SDCBPO00560 AC112229.1-201ENST00000639295 961 ntBASIC16.81■□□□□ 0.28
SDCBPO00560 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SDCBPO00560 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SDCBPO00560 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
SDCBPO00560 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.8■□□□□ 0.28
SDCBPO00560 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SDCBPO00560 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.8■□□□□ 0.28
SDCBPO00560 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.8■□□□□ 0.28
SDCBPO00560 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.8■□□□□ 0.28
SDCBPO00560 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC16.8■□□□□ 0.28
SDCBPO00560 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC16.8■□□□□ 0.28
SDCBPO00560 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SDCBPO00560 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.8■□□□□ 0.28
SDCBPO00560 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SDCBPO00560 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SDCBPO00560 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.79■□□□□ 0.28
SDCBPO00560 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
SDCBPO00560 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.79■□□□□ 0.28
SDCBPO00560 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SDCBPO00560 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.79■□□□□ 0.28
SDCBPO00560 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SDCBPO00560 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
SDCBPO00560 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.79■□□□□ 0.28
SDCBPO00560 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.79■□□□□ 0.28
SDCBPO00560 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SDCBPO00560 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.79■□□□□ 0.28
SDCBPO00560 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SDCBPO00560 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
SDCBPO00560 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.78■□□□□ 0.28
SDCBPO00560 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SDCBPO00560 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.78■□□□□ 0.28
SDCBPO00560 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDCBPO00560 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms