Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK1AO00322 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK1AO00322 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK1AO00322 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.79■□□□□ 0.6
UPK1AO00322 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPK1AO00322 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.78■□□□□ 0.6
UPK1AO00322 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.78■□□□□ 0.6
UPK1AO00322 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.78■□□□□ 0.6
UPK1AO00322 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
UPK1AO00322 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.78■□□□□ 0.6
UPK1AO00322 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.78■□□□□ 0.6
UPK1AO00322 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.78■□□□□ 0.6
UPK1AO00322 AL121832.2-201ENST00000610979 668 ntBASIC18.78■□□□□ 0.6
UPK1AO00322 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.78■□□□□ 0.6
UPK1AO00322 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.78■□□□□ 0.6
UPK1AO00322 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPK1AO00322 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UPK1AO00322 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK1AO00322 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.77■□□□□ 0.6
UPK1AO00322 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK1AO00322 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK1AO00322 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK1AO00322 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
UPK1AO00322 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK1AO00322 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.77■□□□□ 0.6
UPK1AO00322 LSM12P1-201ENST00000411836 588 ntBASIC18.77■□□□□ 0.6
UPK1AO00322 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.77■□□□□ 0.6
UPK1AO00322 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.77■□□□□ 0.6
UPK1AO00322 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.77■□□□□ 0.6
UPK1AO00322 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK1AO00322 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPK1AO00322 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
UPK1AO00322 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.59
UPK1AO00322 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
UPK1AO00322 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
UPK1AO00322 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
UPK1AO00322 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
UPK1AO00322 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
UPK1AO00322 BX119927.1-201ENST00000636596 1552 ntBASIC18.76■□□□□ 0.59
UPK1AO00322 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.76■□□□□ 0.59
UPK1AO00322 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.76■□□□□ 0.59
UPK1AO00322 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 BX276092.2-201ENST00000417668 665 ntBASIC18.76■□□□□ 0.59
UPK1AO00322 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
UPK1AO00322 NCF1B-203ENST00000435988 1254 ntBASIC18.76■□□□□ 0.59
UPK1AO00322 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.76■□□□□ 0.59
UPK1AO00322 C2orf69P4-201ENST00000565394 541 ntBASIC18.76■□□□□ 0.59
UPK1AO00322 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.76■□□□□ 0.59
UPK1AO00322 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.76■□□□□ 0.59
UPK1AO00322 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.76■□□□□ 0.59
UPK1AO00322 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
UPK1AO00322 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.76■□□□□ 0.59
UPK1AO00322 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
UPK1AO00322 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.75■□□□□ 0.59
UPK1AO00322 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.75■□□□□ 0.59
UPK1AO00322 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
UPK1AO00322 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
UPK1AO00322 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.75■□□□□ 0.59
UPK1AO00322 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
UPK1AO00322 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.75■□□□□ 0.59
UPK1AO00322 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.75■□□□□ 0.59
UPK1AO00322 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.75■□□□□ 0.59
UPK1AO00322 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.75■□□□□ 0.59
UPK1AO00322 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.75■□□□□ 0.59
UPK1AO00322 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
UPK1AO00322 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
UPK1AO00322 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
UPK1AO00322 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.74■□□□□ 0.59
UPK1AO00322 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.74■□□□□ 0.59
UPK1AO00322 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms