Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.25■□□□□ 0.83
CBX4O00257 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.25■□□□□ 0.83
CBX4O00257 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
CBX4O00257 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.25■□□□□ 0.83
CBX4O00257 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.25■□□□□ 0.83
CBX4O00257 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
CBX4O00257 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.25■□□□□ 0.83
CBX4O00257 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
CBX4O00257 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.25■□□□□ 0.83
CBX4O00257 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
CBX4O00257 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
CBX4O00257 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CBX4O00257 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.24■□□□□ 0.83
CBX4O00257 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CBX4O00257 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.24■□□□□ 0.83
CBX4O00257 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CBX4O00257 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.24■□□□□ 0.83
CBX4O00257 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CBX4O00257 KRASP1-201ENST00000407852 552 ntBASIC20.24■□□□□ 0.83
CBX4O00257 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.24■□□□□ 0.83
CBX4O00257 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.24■□□□□ 0.83
CBX4O00257 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.24■□□□□ 0.83
CBX4O00257 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.24■□□□□ 0.83
CBX4O00257 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.24■□□□□ 0.83
CBX4O00257 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CBX4O00257 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.24■□□□□ 0.83
CBX4O00257 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CBX4O00257 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CBX4O00257 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CBX4O00257 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CBX4O00257 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CBX4O00257 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.24■□□□□ 0.83
CBX4O00257 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.24■□□□□ 0.83
CBX4O00257 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CBX4O00257 PHGDH-210ENST00000641115 1638 ntBASIC20.24■□□□□ 0.83
CBX4O00257 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CBX4O00257 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CBX4O00257 LINC01521-201ENST00000504184 1943 ntBASIC20.23■□□□□ 0.83
CBX4O00257 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.23■□□□□ 0.83
CBX4O00257 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.23■□□□□ 0.83
CBX4O00257 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CBX4O00257 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CBX4O00257 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CBX4O00257 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CBX4O00257 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CBX4O00257 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.23■□□□□ 0.83
CBX4O00257 AC099778.1-201ENST00000568593 1911 ntBASIC20.23■□□□□ 0.83
CBX4O00257 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CBX4O00257 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CBX4O00257 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
CBX4O00257 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CBX4O00257 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CBX4O00257 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.22■□□□□ 0.83
CBX4O00257 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.22■□□□□ 0.83
CBX4O00257 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.22■□□□□ 0.83
CBX4O00257 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CBX4O00257 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.22■□□□□ 0.83
CBX4O00257 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 AC124016.1-201ENST00000609552 612 ntBASIC20.22■□□□□ 0.83
CBX4O00257 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 AIRN-201ENST00000601203 4374 ntBASIC20.22■□□□□ 0.83
CBX4O00257 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.22■□□□□ 0.83
CBX4O00257 AC018553.1-201ENST00000616682 1458 ntBASIC20.22■□□□□ 0.83
CBX4O00257 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.22■□□□□ 0.83
CBX4O00257 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CBX4O00257 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CBX4O00257 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.22■□□□□ 0.83
CBX4O00257 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms