Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 AL591742.1-201ENST00000604433 565 ntBASIC20.59■□□□□ 0.89
CCDC188H7C350 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC188H7C350 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC188H7C350 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC188H7C350 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC188H7C350 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC188H7C350 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC188H7C350 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC188H7C350 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC188H7C350 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC188H7C350 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC188H7C350 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC188H7C350 AL138781.2-201ENST00000617896 1843 ntBASIC20.58■□□□□ 0.89
CCDC188H7C350 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC188H7C350 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC188H7C350 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC188H7C350 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.58■□□□□ 0.89
CCDC188H7C350 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC188H7C350 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC188H7C350 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC188H7C350 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC188H7C350 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC188H7C350 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC188H7C350 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC188H7C350 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC188H7C350 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC188H7C350 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CCDC188H7C350 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC188H7C350 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC188H7C350 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
CCDC188H7C350 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC188H7C350 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC188H7C350 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 KRT19P1-201ENST00000405746 1186 ntBASIC20.57■□□□□ 0.88
CCDC188H7C350 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.57■□□□□ 0.88
CCDC188H7C350 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC188H7C350 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC188H7C350 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC188H7C350 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC188H7C350 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC188H7C350 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC188H7C350 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC188H7C350 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC188H7C350 YBX1P1-201ENST00000445822 960 ntBASIC20.56■□□□□ 0.88
CCDC188H7C350 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC188H7C350 KRT18P14-201ENST00000534205 1250 ntBASIC20.56■□□□□ 0.88
CCDC188H7C350 AL162412.1-201ENST00000567129 965 ntBASIC20.56■□□□□ 0.88
CCDC188H7C350 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC188H7C350 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC188H7C350 MYCNOS-205ENST00000641950 531 ntBASIC20.56■□□□□ 0.88
CCDC188H7C350 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC188H7C350 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CCDC188H7C350 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CCDC188H7C350 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCDC188H7C350 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC188H7C350 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC188H7C350 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC188H7C350 UBE2DNL-204ENST00000602536 740 ntBASIC20.55■□□□□ 0.88
CCDC188H7C350 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC188H7C350 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC188H7C350 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC188H7C350 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
CCDC188H7C350 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC188H7C350 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC188H7C350 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC188H7C350 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CCDC188H7C350 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms