Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.72□□□□□ -1.33
PTPN9P43378 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.72□□□□□ -1.33
PTPN9P43378 MTND3P6-201ENST00000485242 339 ntBASIC6.72□□□□□ -1.33
PTPN9P43378 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.72□□□□□ -1.33
PTPN9P43378 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC6.72□□□□□ -1.33
PTPN9P43378 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.72□□□□□ -1.33
PTPN9P43378 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.72□□□□□ -1.33
PTPN9P43378 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.72□□□□□ -1.33
PTPN9P43378 AC023968.1-201ENST00000560719 475 ntBASIC6.72□□□□□ -1.33
PTPN9P43378 AC018558.5-201ENST00000565840 952 ntBASIC6.72□□□□□ -1.33
PTPN9P43378 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC6.72□□□□□ -1.33
PTPN9P43378 AL589743.6-201ENST00000611025 117 ntBASIC6.72□□□□□ -1.33
PTPN9P43378 PCA3_2.1-201ENST00000612507 409 ntBASIC6.72□□□□□ -1.33
PTPN9P43378 AC016911.1-201ENST00000613297 452 ntBASIC6.72□□□□□ -1.33
PTPN9P43378 AF117829.2-201ENST00000619538 361 ntBASIC6.72□□□□□ -1.33
PTPN9P43378 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC6.72□□□□□ -1.33
PTPN9P43378 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC6.72□□□□□ -1.33
PTPN9P43378 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC6.72□□□□□ -1.33
PTPN9P43378 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
PTPN9P43378 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
PTPN9P43378 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
PTPN9P43378 LCOR-201ENST00000286067 4542 ntBASIC6.71□□□□□ -1.33
PTPN9P43378 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.71□□□□□ -1.33
PTPN9P43378 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.33
PTPN9P43378 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
PTPN9P43378 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC6.71□□□□□ -1.34
PTPN9P43378 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 SNORD35A-201ENST00000363389 86 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 RN7SKP281-201ENST00000410472 352 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 HMGB1P32-201ENST00000425971 565 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 AC006455.6-201ENST00000426192 893 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 BX119904.3-201ENST00000428194 957 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 OR6R1P-201ENST00000431838 940 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.71□□□□□ -1.34
PTPN9P43378 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.71□□□□□ -1.34
PTPN9P43378 AC015524.1-201ENST00000491585 472 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 AC106800.3-201ENST00000511389 308 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 AC113191.1-201ENST00000517759 403 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 AC021733.2-201ENST00000518830 497 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 COX6B1P4-201ENST00000519826 484 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.71□□□□□ -1.34
PTPN9P43378 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC6.71□□□□□ -1.34
PTPN9P43378 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.71□□□□□ -1.34
PTPN9P43378 MIR4732-201ENST00000581873 76 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.71□□□□□ -1.34
PTPN9P43378 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC6.71□□□□□ -1.34
PTPN9P43378 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.71□□□□□ -1.34
PTPN9P43378 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 SNX18P3-202ENST00000565670 1750 ntBASIC6.71□□□□□ -1.34
PTPN9P43378 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
PTPN9P43378 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
PTPN9P43378 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
PTPN9P43378 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.71□□□□□ -1.34
PTPN9P43378 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.71□□□□□ -1.34
PTPN9P43378 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
PTPN9P43378 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.71□□□□□ -1.34
PTPN9P43378 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 AC125238.2-201ENST00000430003 1440 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 SNORD16-201ENST00000362803 99 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 GAPDHP19-201ENST00000431768 1005 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 PA2G4P1-201ENST00000442248 1197 ntBASIC6.7□□□□□ -1.34
PTPN9P43378 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
PTPN9P43378 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.7□□□□□ -1.34
PTPN9P43378 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC6.7□□□□□ -1.34
PTPN9P43378 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.7□□□□□ -1.34
PTPN9P43378 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms