RNA–Protein interactions for RNA: ENST00000616247.4

LMO3-235, Transcript of LIM domain only 3, humanhuman

TSL 5 BASIC

Gene LMO3, Length 3,227 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-235ENST00000616247 AEBP2Q6ZN18 517 aaPredicted RBP13.72□□□□□ -0.21
LMO3-235ENST00000616247 CHIC1Q5VXU3 224 aa13.11□□□□□ -0.31
LMO3-235ENST00000616247 NISCHQ9Y2I1 1504 aa12.06□□□□□ -0.48
LMO3-235ENST00000616247 SENP3Q9H4L4 574 aaPredicted RBP11.9□□□□□ -0.51
LMO3-235ENST00000616247 PHF23Q9BUL5 403 aaPredicted RBP11.64□□□□□ -0.55
LMO3-235ENST00000616247 SUPT5HO00267 1087 aaKnown RBP11.28□□□□□ -0.6
LMO3-235ENST00000616247 SHROOM4Q9ULL8 1493 aa11.25□□□□□ -0.61
LMO3-235ENST00000616247 HRCP23327 699 aa11.15□□□□□ -0.62
LMO3-235ENST00000616247 PCGF6Q9BYE7 350 aa11.15□□□□□ -0.62
LMO3-235ENST00000616247 PPARGC1BQ86YN6 1023 aaKnown RBP11.12□□□□□ -0.63
LMO3-235ENST00000616247 FOXD1Q16676 465 aa10.96□□□□□ -0.65
LMO3-235ENST00000616247 DCAF8L2P0C7V8 631 aa10.83□□□□□ -0.68
LMO3-235ENST00000616247 LOC105371045A0A1W2PR82 267 aa10.75□□□□□ -0.69
LMO3-235ENST00000616247 PELP1Q8IZL8 1130 aaKnown RBP10.75□□□□□ -0.69
LMO3-235ENST00000616247 MYO15BQ96JP2 1530 aa10.73□□□□□ -0.69
LMO3-235ENST00000616247 EHMT2Q96KQ7 1210 aa10.65□□□□□ -0.71
LMO3-235ENST00000616247 TRIM26Q12899 539 aaPredicted RBP10.61□□□□□ -0.71
LMO3-235ENST00000616247 SCAF1Q9H7N4 1312 aaKnown RBP10.6□□□□□ -0.71
LMO3-235ENST00000616247 FAM9AQ8IZU1 332 aaPredicted RBP10.52□□□□□ -0.73
LMO3-235ENST00000616247 ZEB1P37275 1124 aaPredicted RBP10.5□□□□□ -0.73
LMO3-235ENST00000616247 PLPPR3Q6T4P5 718 aa10.5□□□□□ -0.73
LMO3-235ENST00000616247 MSH5O43196 834 aa10.45□□□□□ -0.74
LMO3-235ENST00000616247 DCAF1Q9Y4B6 1507 aa10.41□□□□□ -0.74
LMO3-235ENST00000616247 CCDC180Q9P1Z9 1646 aa10.38□□□□□ -0.75
LMO3-235ENST00000616247 GTF3C3Q9Y5Q9 886 aa10.37□□□□□ -0.75
LMO3-235ENST00000616247 TTBK1Q5TCY1 1321 aaPredicted RBP10.36□□□□□ -0.75
LMO3-235ENST00000616247 NEUROD1Q13562 356 aa10.36□□□□□ -0.75
LMO3-235ENST00000616247 CCER1Q8TC90 406 aaPredicted RBP10.34□□□□□ -0.75
LMO3-235ENST00000616247 ACIN1Q9UKV3 1341 aaKnown RBP10.34□□□□□ -0.75
LMO3-235ENST00000616247 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.33□□□□□ -0.76
LMO3-235ENST00000616247 CENPBP07199 599 aaPredicted RBP10.33□□□□□ -0.76
LMO3-235ENST00000616247 TRIM41Q8WV44 630 aa10.32□□□□□ -0.76
LMO3-235ENST00000616247 YTHDC1Q96MU7 727 aaKnown RBP10.31□□□□□ -0.76
LMO3-235ENST00000616247 MYT1Q01538 1121 aa10.3□□□□□ -0.76
LMO3-235ENST00000616247 DIEXFQ68CQ4 756 aaKnown RBP10.25□□□□□ -0.77
LMO3-235ENST00000616247 PIAS4Q8N2W9 510 aaPredicted RBP10.24□□□□□ -0.77
LMO3-235ENST00000616247 ZCCHC6Q5VYS8 1495 aaKnown RBP10.19□□□□□ -0.78
LMO3-235ENST00000616247 ABCC9O60706 1549 aa10.15□□□□□ -0.78
LMO3-235ENST00000616247 POTEDQ86YR6 584 aa10.13□□□□□ -0.79
LMO3-235ENST00000616247 PPP6R1Q9UPN7 881 aa10.12□□□□□ -0.79
LMO3-235ENST00000616247 ADRA2BP18089 450 aa10.11□□□□□ -0.79
LMO3-235ENST00000616247 ZNF316A6NFI3 1004 aaPredicted RBP9.99□□□□□ -0.81
LMO3-235ENST00000616247 MIER1Q8N108 512 aa9.97□□□□□ -0.81
LMO3-235ENST00000616247 HNRNPUL2Q1KMD3 747 aaKnown RBP9.95□□□□□ -0.82
LMO3-235ENST00000616247 UBTFP17480 764 aaKnown RBP9.89□□□□□ -0.83
LMO3-235ENST00000616247 RANGAP1P46060 587 aaPredicted RBP9.88□□□□□ -0.83
LMO3-235ENST00000616247 BCANQ96GW7 911 aa9.84□□□□□ -0.83
LMO3-235ENST00000616247 RSF1Q96T23 1441 aaPredicted RBP9.82□□□□□ -0.84
LMO3-235ENST00000616247 APLP2Q06481 763 aa9.77□□□□□ -0.85
LMO3-235ENST00000616247 BCL11AQ9H165 835 aa9.77□□□□□ -0.85
LMO3-235ENST00000616247 SUPT16HQ9Y5B9 1047 aaKnown RBP9.76□□□□□ -0.85
LMO3-235ENST00000616247 SCRIBQ14160 1630 aa9.76□□□□□ -0.85
LMO3-235ENST00000616247 ANP32EQ9BTT0 268 aa9.75□□□□□ -0.85
LMO3-235ENST00000616247 RB1CC1Q8TDY2 1594 aa9.74□□□□□ -0.85
LMO3-235ENST00000616247 NACADO15069 1562 aa9.73□□□□□ -0.85
LMO3-235ENST00000616247 TSHZ2Q9NRE2 1034 aa9.71□□□□□ -0.85
LMO3-235ENST00000616247 CSRNP3Q8WYN3 585 aa9.7□□□□□ -0.86
LMO3-235ENST00000616247 CEP162Q5TB80 1403 aa9.66□□□□□ -0.86
LMO3-235ENST00000616247 PABPN1Q86U42 306 aaKnown RBP eCLIP9.66□□□□□ -0.86
LMO3-235ENST00000616247 ITGAEP38570 1179 aa9.65□□□□□ -0.86
LMO3-235ENST00000616247 FKBP8Q14318 412 aa9.65□□□□□ -0.86
LMO3-235ENST00000616247 NEFLP07196 543 aa9.63□□□□□ -0.87
LMO3-235ENST00000616247 ERICH6Q7L0X2 663 aa9.62□□□□□ -0.87
LMO3-235ENST00000616247 KCNH8Q96L42 1107 aa9.61□□□□□ -0.87
LMO3-235ENST00000616247 CECR2Q9BXF3 1484 aa9.59□□□□□ -0.87
LMO3-235ENST00000616247 CLSPNQ9HAW4 1339 aa9.57□□□□□ -0.88
LMO3-235ENST00000616247 SOGA1O94964 1423 aa9.56□□□□□ -0.88
LMO3-235ENST00000616247 UNC13AQ9UPW8 1703 aa9.56□□□□□ -0.88
LMO3-235ENST00000616247 TRIM52Q96A61 297 aa9.55□□□□□ -0.88
LMO3-235ENST00000616247 DDX10Q13206 875 aaKnown RBP9.54□□□□□ -0.88
LMO3-235ENST00000616247 RBM19Q9Y4C8 960 aaKnown RBP9.53□□□□□ -0.88
LMO3-235ENST00000616247 TNIKQ9UKE5 1360 aa9.53□□□□□ -0.88
LMO3-235ENST00000616247 CCDC88BA6NC98 1476 aa9.53□□□□□ -0.88
LMO3-235ENST00000616247 SLC24A1O60721 1099 aa9.52□□□□□ -0.89
LMO3-235ENST00000616247 HIRIP3Q9BW71 556 aaPredicted RBP9.52□□□□□ -0.89
LMO3-235ENST00000616247 WRNQ14191 1432 aaPredicted RBP eCLIP9.52□□□□□ -0.89
LMO3-235ENST00000616247 ABCC8Q09428 1581 aa9.51□□□□□ -0.89
LMO3-235ENST00000616247 MROH2BQ7Z745 1585 aa9.5□□□□□ -0.89
LMO3-235ENST00000616247 IRX6P78412 446 aaPredicted RBP9.49□□□□□ -0.89
LMO3-235ENST00000616247 BICRAQ9NZM4 1560 aa9.49□□□□□ -0.89
LMO3-235ENST00000616247 RUSC2Q8N2Y8 1516 aa9.48□□□□□ -0.89
LMO3-235ENST00000616247 CLIP1P30622 1438 aa9.44□□□□□ -0.9
LMO3-235ENST00000616247 WIZO95785 1651 aa9.44□□□□□ -0.9
LMO3-235ENST00000616247 CDK11AQ9UQ88 783 aaPredicted RBP9.42□□□□□ -0.9
LMO3-235ENST00000616247 ATP1B4Q9UN42 357 aaPredicted RBP9.41□□□□□ -0.9
LMO3-235ENST00000616247 GOLGA3Q08378 1498 aa9.41□□□□□ -0.9
LMO3-235ENST00000616247 DMRT2Q9Y5R5 561 aa9.41□□□□□ -0.9
LMO3-235ENST00000616247 ANP32CO43423 234 aa9.4□□□□□ -0.9
LMO3-235ENST00000616247 DHX57Q6P158 1386 aaKnown RBP9.39□□□□□ -0.91
LMO3-235ENST00000616247 NBR1Q14596 966 aa9.39□□□□□ -0.91
LMO3-235ENST00000616247 KANK4Q5T7N3 995 aaPredicted RBP9.37□□□□□ -0.91
LMO3-235ENST00000616247 SIN3AQ96ST3 1273 aa9.37□□□□□ -0.91
LMO3-235ENST00000616247 HNRNPUQ00839 825 aaKnown RBP eCLIP9.37□□□□□ -0.91
LMO3-235ENST00000616247 CNGB1Q14028 1251 aaPredicted RBP9.37□□□□□ -0.91
LMO3-235ENST00000616247 FAM50AQ14320 339 aaKnown RBP9.36□□□□□ -0.91
LMO3-235ENST00000616247 EEA1Q15075 1411 aa9.34□□□□□ -0.92
LMO3-235ENST00000616247 VPS8Q8N3P4 1428 aa9.33□□□□□ -0.92
LMO3-235ENST00000616247 DEKP35659 375 aaKnown RBP9.33□□□□□ -0.92
LMO3-235ENST00000616247 CEP164Q9UPV0 1460 aa9.29□□□□□ -0.92
LMO3-235ENST00000616247 PRKCSHP14314 528 aaPredicted RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 173.4 ms