Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HOXC4P09017 RAB5CP1-201ENST00000395972 580 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 RNA5SP431-201ENST00000410312 120 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXC4P09017 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXC4P09017 RPL7AP14-201ENST00000424041 802 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 CXCR2P1-202ENST00000443392 1074 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HOXC4P09017 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXC4P09017 RN7SL714P-201ENST00000487050 298 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXC4P09017 AC095052.1-201ENST00000509955 863 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 RNA5SP206-201ENST00000516703 121 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 NATP-201ENST00000523491 878 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 BCAS2P1-201ENST00000528022 632 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 TOMM20P1-201ENST00000534518 427 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.28□□□□□ -1.4
HOXC4P09017 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 AC027667.1-201ENST00000545814 304 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXC4P09017 AC004232.2-201ENST00000574245 821 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 MIR4701-201ENST00000583094 63 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.28□□□□□ -1.4
HOXC4P09017 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 AC124916.2-201ENST00000604416 224 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 AC073389.3-201ENST00000609434 935 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 AL080312.2-201ENST00000613001 630 ntBASIC6.28□□□□□ -1.4
HOXC4P09017 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.28□□□□□ -1.4
HOXC4P09017 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.28□□□□□ -1.4
HOXC4P09017 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
HOXC4P09017 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HOXC4P09017 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.27□□□□□ -1.4
HOXC4P09017 AC105235.1-201ENST00000623208 1816 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.27□□□□□ -1.41
HOXC4P09017 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
HOXC4P09017 AC007679.3-201ENST00000434035 414 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 AC010240.2-201ENST00000445363 1205 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 MORF4-201ENST00000447135 971 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.27□□□□□ -1.41
HOXC4P09017 AP002453.1-201ENST00000492327 668 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 AC023818.1-201ENST00000498379 384 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.27□□□□□ -1.41
HOXC4P09017 HMGN1P17-201ENST00000513734 295 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC6.27□□□□□ -1.41
HOXC4P09017 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.27□□□□□ -1.41
HOXC4P09017 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.27□□□□□ -1.41
HOXC4P09017 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 AC002310.3-201ENST00000569728 723 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 MIR4502-201ENST00000580432 81 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 AL499605.1-201ENST00000604628 403 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 AP002370.1-201ENST00000528055 1602 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.27□□□□□ -1.41
HOXC4P09017 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.27□□□□□ -1.41
HOXC4P09017 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 AC013488.1-201ENST00000526618 1838 ntBASIC6.27□□□□□ -1.41
HOXC4P09017 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.27□□□□□ -1.41
HOXC4P09017 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.27□□□□□ -1.41
HOXC4P09017 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HOXC4P09017 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
HOXC4P09017 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HOXC4P09017 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.26□□□□□ -1.41
HOXC4P09017 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HOXC4P09017 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
HOXC4P09017 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.26□□□□□ -1.41
HOXC4P09017 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HOXC4P09017 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HOXC4P09017 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HOXC4P09017 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HOXC4P09017 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
HOXC4P09017 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HOXC4P09017 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms