Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 LRRC37A17P-201ENST00000570311 4693 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC7.78□□□□□ -1.16
COL5A3P25940 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC7.78□□□□□ -1.16
COL5A3P25940 AK4P4-201ENST00000419465 646 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 CCNB1IP1P1-201ENST00000428976 839 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC7.78□□□□□ -1.16
COL5A3P25940 EIF4A1P6-201ENST00000448133 1210 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 AC095057.1-201ENST00000507583 168 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC7.78□□□□□ -1.16
COL5A3P25940 OR7A11P-201ENST00000597719 953 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC7.78□□□□□ -1.16
COL5A3P25940 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC7.78□□□□□ -1.16
COL5A3P25940 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC7.78□□□□□ -1.16
COL5A3P25940 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC7.77□□□□□ -1.16
COL5A3P25940 AC078880.4-201ENST00000617627 1749 ntBASIC7.77□□□□□ -1.16
COL5A3P25940 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC7.77□□□□□ -1.17
COL5A3P25940 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
COL5A3P25940 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC7.77□□□□□ -1.17
COL5A3P25940 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
COL5A3P25940 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC7.77□□□□□ -1.17
COL5A3P25940 AL121776.1-201ENST00000429337 372 ntBASIC7.77□□□□□ -1.17
COL5A3P25940 TUBB4BP6-201ENST00000437576 479 ntBASIC7.77□□□□□ -1.17
COL5A3P25940 PTMAP6-201ENST00000439110 327 ntBASIC7.77□□□□□ -1.17
COL5A3P25940 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC7.77□□□□□ -1.17
COL5A3P25940 AC002456.2-201ENST00000509356 380 ntBASIC7.77□□□□□ -1.17
COL5A3P25940 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC7.77□□□□□ -1.17
COL5A3P25940 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC7.77□□□□□ -1.17
COL5A3P25940 AC090651.1-201ENST00000567865 634 ntBASIC7.77□□□□□ -1.17
COL5A3P25940 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 AC006924.1-201ENST00000610750 559 ntBASIC7.77□□□□□ -1.17
COL5A3P25940 AC022919.1-201ENST00000624979 626 ntBASIC7.77□□□□□ -1.17
COL5A3P25940 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC7.77□□□□□ -1.17
COL5A3P25940 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC7.77□□□□□ -1.17
COL5A3P25940 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.17
COL5A3P25940 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.17
COL5A3P25940 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.17
COL5A3P25940 PIEZO2-203ENST00000503781 8259 ntAPPRIS P2 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
COL5A3P25940 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL5A3P25940 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL5A3P25940 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
COL5A3P25940 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL5A3P25940 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
COL5A3P25940 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC7.76□□□□□ -1.17
COL5A3P25940 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL5A3P25940 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 AL627308.1-201ENST00000435693 821 ntBASIC7.76□□□□□ -1.17
COL5A3P25940 EEF1B2P6-201ENST00000445713 673 ntBASIC7.76□□□□□ -1.17
COL5A3P25940 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 AP004607.6-201ENST00000525033 1202 ntBASIC7.76□□□□□ -1.17
COL5A3P25940 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL5A3P25940 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL5A3P25940 AC092130.1-201ENST00000565531 531 ntTSL 4 BASIC7.76□□□□□ -1.17
COL5A3P25940 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.76□□□□□ -1.17
COL5A3P25940 IMMP1LP3-201ENST00000604197 224 ntBASIC7.76□□□□□ -1.17
COL5A3P25940 SUMO2P15-201ENST00000604285 278 ntBASIC7.76□□□□□ -1.17
COL5A3P25940 AC139493.1-201ENST00000604368 397 ntBASIC7.76□□□□□ -1.17
COL5A3P25940 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC7.76□□□□□ -1.17
COL5A3P25940 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 OR7E25P-202ENST00000641088 5937 ntBASIC7.76□□□□□ -1.17
COL5A3P25940 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
COL5A3P25940 AL161901.1-201ENST00000624954 3425 ntBASIC7.76□□□□□ -1.17
COL5A3P25940 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
COL5A3P25940 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL5A3P25940 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL5A3P25940 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.76□□□□□ -1.17
COL5A3P25940 RBM12B-202ENST00000517700 6001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 GUCY1B2-204ENST00000531898 1979 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 SNORA64.1-201ENST00000362600 132 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 RN7SKP77-201ENST00000363261 353 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 MIR105-2-201ENST00000385083 81 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 CYP4F30P-202ENST00000420048 405 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC7.75□□□□□ -1.17
COL5A3P25940 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms