Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CYB5D1-201ENST00000332439 3509 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 BTF3L4-202ENST00000472944 2159 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 C11orf54-202ENST00000354421 1733 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC7.62□□□□□ -1.19
MSX1P28360 PTPRK-206ENST00000368215 4651 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 SNORA35-201ENST00000386104 128 ntBASIC7.62□□□□□ -1.19
MSX1P28360 DNAJA1P3-201ENST00000399417 1194 ntBASIC7.62□□□□□ -1.19
MSX1P28360 RPS26P38-201ENST00000414476 348 ntBASIC7.62□□□□□ -1.19
MSX1P28360 RPL23AP39-201ENST00000415533 405 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AC114760.1-201ENST00000420310 652 ntBASIC7.62□□□□□ -1.19
MSX1P28360 RNGTTP1-201ENST00000420965 728 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AL357632.1-201ENST00000426688 643 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AC007683.1-201ENST00000432746 591 ntBASIC7.62□□□□□ -1.19
MSX1P28360 DEFA9P-201ENST00000433042 285 ntBASIC7.62□□□□□ -1.19
MSX1P28360 DDX3X-202ENST00000441189 1051 ntTSL 2 BASIC7.62□□□□□ -1.19
MSX1P28360 ARL5AP2-201ENST00000444698 533 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AC007677.1-201ENST00000445757 515 ntBASIC7.62□□□□□ -1.19
MSX1P28360 DPPA3P1-201ENST00000448050 469 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 AL591363.1-201ENST00000450091 483 ntBASIC7.62□□□□□ -1.19
MSX1P28360 RPS20P24-201ENST00000457473 361 ntBASIC7.62□□□□□ -1.19
MSX1P28360 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.19
MSX1P28360 RN7SL496P-201ENST00000470372 290 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC7.62□□□□□ -1.19
MSX1P28360 PPM1K-204ENST00000508256 923 ntTSL 2 BASIC7.62□□□□□ -1.19
MSX1P28360 EGFLAM-AS1-201ENST00000508986 331 ntTSL 3 BASIC7.62□□□□□ -1.19
MSX1P28360 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC7.62□□□□□ -1.19
MSX1P28360 AC138866.1-201ENST00000514522 497 ntBASIC7.62□□□□□ -1.19
MSX1P28360 MTHFD2P4-201ENST00000515074 1025 ntBASIC7.62□□□□□ -1.19
MSX1P28360 RNA5SP101-201ENST00000517036 108 ntBASIC7.62□□□□□ -1.19
MSX1P28360 MTND6P20-201ENST00000522986 418 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC7.62□□□□□ -1.19
MSX1P28360 AC244502.1-205ENST00000535351 571 ntTSL 4 BASIC7.62□□□□□ -1.19
MSX1P28360 AC004825.1-201ENST00000555068 586 ntBASIC7.62□□□□□ -1.19
MSX1P28360 OR11J5P-201ENST00000556889 934 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC7.62□□□□□ -1.19
MSX1P28360 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC7.62□□□□□ -1.19
MSX1P28360 AP000894.4-201ENST00000610185 483 ntBASIC7.62□□□□□ -1.19
MSX1P28360 5_8S_rRNA.2-201ENST00000612732 151 ntBASIC7.62□□□□□ -1.19
MSX1P28360 RMST_5.1-201ENST00000618704 126 ntBASIC7.62□□□□□ -1.19
MSX1P28360 USP12-203ENST00000620323 349 ntTSL 3 BASIC7.62□□□□□ -1.19
MSX1P28360 AF001550.2-201ENST00000636643 217 ntBASIC7.62□□□□□ -1.19
MSX1P28360 HSPD1P7-201ENST00000447985 1686 ntBASIC7.62□□□□□ -1.19
MSX1P28360 MSANTD3-TMEFF1-201ENST00000502978 2069 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
MSX1P28360 XRCC6P3-201ENST00000422187 1621 ntBASIC7.62□□□□□ -1.19
MSX1P28360 AC073055.1-201ENST00000456901 1621 ntBASIC7.62□□□□□ -1.19
MSX1P28360 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 MOSPD1-203ENST00000370783 2364 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 CACNB2-201ENST00000282343 3524 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
MSX1P28360 HMGB4-203ENST00000519684 2343 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 RPL12P38-202ENST00000588627 2319 ntBASIC7.62□□□□□ -1.19
MSX1P28360 ASPH-207ENST00000517847 1947 ntTSL 5 BASIC7.62□□□□□ -1.19
MSX1P28360 TACC2-207ENST00000369000 3813 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 LINC01427-202ENST00000635258 4566 ntTSL 5 BASIC7.62□□□□□ -1.19
MSX1P28360 TFIP11-217ENST00000619735 3402 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 IL24-202ENST00000367093 1819 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSX1P28360 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 UQCRC2-202ENST00000561553 1415 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 CEP95-201ENST00000553412 2492 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 MCC-209ENST00000515367 3844 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 KRIT1-203ENST00000394505 3143 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
MSX1P28360 IKZF2-202ENST00000374319 2001 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 MITF-203ENST00000328528 4680 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 AC007342.7-201ENST00000624610 2337 ntBASIC7.61□□□□□ -1.19
MSX1P28360 RFX3-202ENST00000358730 2971 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 EML5-201ENST00000380664 5910 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 AC027279.1-201ENST00000568885 4284 ntBASIC7.61□□□□□ -1.19
MSX1P28360 PSMC2-201ENST00000292644 2637 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 NDE1-202ENST00000396355 3936 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 AC090229.1-201ENST00000590983 1609 ntBASIC7.61□□□□□ -1.19
MSX1P28360 MTERF4-222ENST00000614476 4524 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSX1P28360 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
MSX1P28360 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC7.61□□□□□ -1.19
MSX1P28360 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 RPSAP42-201ENST00000403415 878 ntBASIC7.61□□□□□ -1.19
MSX1P28360 RNA5SP80-201ENST00000410475 111 ntBASIC7.61□□□□□ -1.19
MSX1P28360 RN7SKP56-201ENST00000410513 331 ntBASIC7.61□□□□□ -1.19
MSX1P28360 AC008063.1-201ENST00000418335 640 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 AC111200.2-201ENST00000418877 505 ntBASIC7.61□□□□□ -1.19
MSX1P28360 RPS7P12-201ENST00000422385 582 ntBASIC7.61□□□□□ -1.19
MSX1P28360 AL031733.1-201ENST00000422817 455 ntBASIC7.61□□□□□ -1.19
MSX1P28360 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 AL109809.3-201ENST00000456875 246 ntBASIC7.61□□□□□ -1.19
MSX1P28360 RN7SL74P-201ENST00000464966 299 ntBASIC7.61□□□□□ -1.19
MSX1P28360 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC7.61□□□□□ -1.19
MSX1P28360 MTCO3P9-201ENST00000506989 781 ntBASIC7.61□□□□□ -1.19
MSX1P28360 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC7.61□□□□□ -1.19
MSX1P28360 AC114812.3-201ENST00000509542 730 ntBASIC7.61□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms