Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 RN7SKP98-201ENST00000517070 156 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 MTCO2P15-201ENST00000532655 656 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC103855.4-201ENST00000533158 265 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC073571.1-201ENST00000549103 475 ntTSL 3 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC069366.1-201ENST00000583159 838 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AL391903.2-201ENST00000614532 247 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AP001153.1-201ENST00000641024 338 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 LINC02211-204ENST00000642024 1070 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 PALM2-AKAP2-201ENST00000302798 4718 ntTSL 2 BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 FAM13A-205ENST00000503556 3386 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AC006058.1-201ENST00000568686 5067 ntBASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 HHLA2-201ENST00000357759 2666 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
TRAIPQ9BWF2 AL157713.1-201ENST00000379752 1531 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 CASP12-201ENST00000375726 1306 ntAPPRIS P5 TSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 LRRC37A9P-201ENST00000603850 5376 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 SLC4A4-203ENST00000351898 3771 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 XRCC6P2-201ENST00000457831 1822 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 HSPD1P9-201ENST00000420325 1636 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MED23-209ENST00000539158 1636 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RCBTB1-201ENST00000258646 3816 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MUC1-205ENST00000368389 543 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MUC1-206ENST00000368390 804 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MUC1-209ENST00000368396 516 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MUC1-210ENST00000368398 729 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RNU6-1242P-201ENST00000391052 103 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC113608.1-201ENST00000398740 305 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 U3.31-201ENST00000408113 216 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RNA5SP231-201ENST00000410496 138 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RPSAP1-201ENST00000421328 880 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RPL23AP85-201ENST00000421838 433 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RPL6P2-201ENST00000425480 783 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AL138479.1-201ENST00000426913 484 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 SNX18P14-201ENST00000429308 574 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RPL7P29-201ENST00000437151 728 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RNF148-202ENST00000447240 839 ntTSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 OR7E62P-201ENST00000456741 477 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 GRHL1-206ENST00000480736 572 ntTSL 4 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC233724.1-201ENST00000503894 233 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC008629.3-201ENST00000505786 586 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 GAPDHP61-201ENST00000507324 1005 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC016559.1-201ENST00000511420 199 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RN7SKP2-201ENST00000517003 319 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 snoZ278.1-201ENST00000517059 112 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MRPS36P3-201ENST00000519284 130 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 MTCO3P15-201ENST00000526563 574 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 POLR2KP1-201ENST00000553226 168 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC023813.2-201ENST00000564321 469 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC013444.2-201ENST00000603317 787 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC069499.2-201ENST00000610665 382 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AC024257.5-201ENST00000612739 531 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 AL162574.1-201ENST00000615702 950 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 U6.48-201ENST00000618523 106 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 SFR1-201ENST00000369727 1438 ntAPPRIS P4 TSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 PWRN1-212ENST00000569908 1435 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 RLIMP2-201ENST00000427891 1563 ntBASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC8.34□□□□□ -1.07
TRAIPQ9BWF2 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
TRAIPQ9BWF2 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
TRAIPQ9BWF2 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC8.34□□□□□ -1.08
TRAIPQ9BWF2 AC087045.3-201ENST00000623046 2468 ntBASIC8.34□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms