Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC244517.10-201ENST00000624396 548 ntAPPRIS P1 TSL 4 BASIC7.66□□□□□ -1.18
MSX1P28360 UQCRC2-213ENST00000630839 535 ntTSL 4 BASIC7.66□□□□□ -1.18
MSX1P28360 AL356289.1-201ENST00000635446 743 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 FAM157B-203ENST00000639350 358 ntBASIC7.66□□□□□ -1.18
MSX1P28360 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 AC145207.5-201ENST00000582866 2682 ntBASIC7.66□□□□□ -1.18
MSX1P28360 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
MSX1P28360 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 LRRC66-201ENST00000343457 3327 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 CYP4A11-203ENST00000371905 1725 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 CXCR6-201ENST00000304552 1962 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 NLK-201ENST00000407008 4047 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 CASP7-207ENST00000452490 2271 ntTSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 ZFP42-202ENST00000509524 2480 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 CLDN2-203ENST00000541806 3150 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 TMPRSS4-219ENST00000616579 3417 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 AP003972.1-201ENST00000625192 5446 ntBASIC7.65□□□□□ -1.18
MSX1P28360 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 RN7SKP133-201ENST00000364845 340 ntBASIC7.65□□□□□ -1.18
MSX1P28360 FCGR3B-202ENST00000367964 2143 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC7.65□□□□□ -1.18
MSX1P28360 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 PAAF1-202ENST00000376384 1500 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 ARMC3-202ENST00000376528 3258 ntTSL 2 BASIC7.65□□□□□ -1.18
MSX1P28360 AC093719.1-202ENST00000392735 373 ntBASIC7.65□□□□□ -1.18
MSX1P28360 AC003045.1-201ENST00000398779 713 ntBASIC7.65□□□□□ -1.18
MSX1P28360 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 PSG8-203ENST00000404209 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 FTH1P26-201ENST00000406512 701 ntBASIC7.65□□□□□ -1.18
MSX1P28360 XPO1-203ENST00000406957 3479 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 NFIA-208ENST00000407417 2123 ntTSL 2 BASIC7.65□□□□□ -1.18
MSX1P28360 CCDC129-202ENST00000407970 3269 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC7.65□□□□□ -1.18
MSX1P28360 AC009228.1-201ENST00000413254 240 ntTSL 2 BASIC7.65□□□□□ -1.18
MSX1P28360 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 C1DP2-201ENST00000418167 426 ntBASIC7.65□□□□□ -1.18
MSX1P28360 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 FABP7P1-201ENST00000424004 391 ntBASIC7.65□□□□□ -1.18
MSX1P28360 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 LINC01363-201ENST00000426709 971 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC7.65□□□□□ -1.18
MSX1P28360 FUNDC2P4-201ENST00000441207 421 ntBASIC7.65□□□□□ -1.18
MSX1P28360 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 AC006026.1-201ENST00000444025 1803 ntBASIC7.65□□□□□ -1.18
MSX1P28360 RPL7P36-201ENST00000444633 681 ntBASIC7.65□□□□□ -1.18
MSX1P28360 SEPHS1P4-201ENST00000446112 1176 ntBASIC7.65□□□□□ -1.18
MSX1P28360 MAMDC2-AS1-204ENST00000448377 1923 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC7.65□□□□□ -1.18
MSX1P28360 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC7.65□□□□□ -1.18
MSX1P28360 RN7SL218P-201ENST00000464637 299 ntBASIC7.65□□□□□ -1.18
MSX1P28360 ZBTB20-AS1-203ENST00000475939 1687 ntTSL 2 BASIC7.65□□□□□ -1.18
MSX1P28360 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 RN7SL505P-201ENST00000482644 293 ntBASIC7.65□□□□□ -1.18
MSX1P28360 AC117392.1-201ENST00000487061 596 ntBASIC7.65□□□□□ -1.18
MSX1P28360 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 MTCYBP18-201ENST00000501056 747 ntBASIC7.65□□□□□ -1.18
MSX1P28360 LINC01182-202ENST00000510907 2228 ntTSL 2 BASIC7.65□□□□□ -1.18
MSX1P28360 HSD3BP4-201ENST00000511509 1120 ntBASIC7.65□□□□□ -1.18
MSX1P28360 GC-208ENST00000513476 1567 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 KIAA1257-205ENST00000515659 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC7.65□□□□□ -1.18
MSX1P28360 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 PPP6R3-218ENST00000529710 3228 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC7.65□□□□□ -1.18
MSX1P28360 AC069235.1-202ENST00000545535 540 ntTSL 3 BASIC7.65□□□□□ -1.18
MSX1P28360 C14orf2-203ENST00000553430 1659 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 EEF1A1P2-201ENST00000553854 1447 ntBASIC7.65□□□□□ -1.18
MSX1P28360 AC121758.1-202ENST00000556917 658 ntBASIC7.65□□□□□ -1.18
MSX1P28360 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 TAPT1-AS1-203ENST00000573950 510 ntTSL 3 BASIC7.65□□□□□ -1.18
MSX1P28360 RN7SL619P-201ENST00000581753 258 ntBASIC7.65□□□□□ -1.18
MSX1P28360 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 AC007998.3-202ENST00000591141 697 ntTSL 3 BASIC7.65□□□□□ -1.18
MSX1P28360 AP001542.2-201ENST00000593141 364 ntBASIC7.65□□□□□ -1.18
MSX1P28360 AL049634.3-201ENST00000604968 457 ntBASIC7.65□□□□□ -1.18
MSX1P28360 CASC15-205ENST00000606336 1288 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
MSX1P28360 RNF219-AS1-213ENST00000607860 577 ntTSL 4 BASIC7.65□□□□□ -1.18
MSX1P28360 AP003121.1-201ENST00000609845 414 ntTSL 3 BASIC7.65□□□□□ -1.18
MSX1P28360 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC7.65□□□□□ -1.18
MSX1P28360 AC093838.1-201ENST00000613014 469 ntBASIC7.65□□□□□ -1.18
MSX1P28360 RN7SL820P-201ENST00000616437 299 ntBASIC7.65□□□□□ -1.18
MSX1P28360 AC048380.3-201ENST00000623145 796 ntBASIC7.65□□□□□ -1.18
MSX1P28360 C20orf78-202ENST00000623418 606 ntTSL 2 BASIC7.65□□□□□ -1.18
MSX1P28360 AC092718.7-201ENST00000623577 1776 ntBASIC7.65□□□□□ -1.18
MSX1P28360 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 KCNA2-205ENST00000633222 11877 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
MSX1P28360 STRADA-233ENST00000638888 1718 ntTSL 5 BASIC7.65□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms