Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USH1CQ9Y6N9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 AIRN-201ENST00000601203 4374 ntBASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USH1CQ9Y6N9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 AC138907.5-202ENST00000569484 235 ntBASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 KRT87P-202ENST00000534226 1464 ntBASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 AC007613.1-201ENST00000572811 2597 ntBASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
USH1CQ9Y6N9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 KRT8P36-201ENST00000489121 1440 ntBASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 AC120498.10-201ENST00000621827 505 ntBASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USH1CQ9Y6N9 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 AL032819.2-201ENST00000624543 2162 ntBASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USH1CQ9Y6N9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USH1CQ9Y6N9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms