Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 HLA-G-202ENST00000376815 851 ntBASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 HLA-G-203ENST00000376818 1127 ntBASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 RN7SL471P-201ENST00000580476 299 ntBASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL4A3BPQ9Y5P4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
COL4A3BPQ9Y5P4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.15
COL4A3BPQ9Y5P4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 AL359736.2-201ENST00000621992 437 ntBASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 BX119927.1-201ENST00000636596 1552 ntBASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.2■■□□□ 1.14
COL4A3BPQ9Y5P4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 C1QBPP2-201ENST00000528754 825 ntBASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL4A3BPQ9Y5P4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 RPPH1-201ENST00000516869 333 ntBASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
COL4A3BPQ9Y5P4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL4A3BPQ9Y5P4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
COL4A3BPQ9Y5P4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms