Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 AC009237.14-201ENST00000609975 1594 ntBASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 AP001271.2-201ENST00000624018 1556 ntBASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
AP4E1Q9UPM8 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 AC125437.2-201ENST00000625180 2167 ntBASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.58■□□□□ 0.89
AP4E1Q9UPM8 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
AP4E1Q9UPM8 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
AP4E1Q9UPM8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
AP4E1Q9UPM8 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
AP4E1Q9UPM8 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
AP4E1Q9UPM8 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
AP4E1Q9UPM8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
AP4E1Q9UPM8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
AP4E1Q9UPM8 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms