Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC37.85■■■■□ 3.65
SHROOM4Q9ULL8 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC37.85■■■■□ 3.65
SHROOM4Q9ULL8 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC37.85■■■■□ 3.65
SHROOM4Q9ULL8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC37.85■■■■□ 3.65
SHROOM4Q9ULL8 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC37.85■■■■□ 3.65
SHROOM4Q9ULL8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC37.85■■■■□ 3.65
SHROOM4Q9ULL8 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC37.85■■■■□ 3.65
SHROOM4Q9ULL8 TSPY14P-201ENST00000303979 915 ntBASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 KRT18P48-201ENST00000434763 852 ntBASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 C2orf69P3-201ENST00000565542 1120 ntBASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 FP700111.2-201ENST00000619190 1892 ntBASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC37.84■■■■□ 3.65
SHROOM4Q9ULL8 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC37.83■■■■□ 3.65
SHROOM4Q9ULL8 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC37.83■■■■□ 3.65
SHROOM4Q9ULL8 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC37.83■■■■□ 3.65
SHROOM4Q9ULL8 KRT18P56-201ENST00000507275 550 ntBASIC37.83■■■■□ 3.65
SHROOM4Q9ULL8 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC37.83■■■■□ 3.65
SHROOM4Q9ULL8 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC37.82■■■■□ 3.65
SHROOM4Q9ULL8 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC37.82■■■■□ 3.65
SHROOM4Q9ULL8 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC37.82■■■■□ 3.65
SHROOM4Q9ULL8 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC37.82■■■■□ 3.64
SHROOM4Q9ULL8 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC37.81■■■■□ 3.64
SHROOM4Q9ULL8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC37.81■■■■□ 3.64
SHROOM4Q9ULL8 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC37.81■■■■□ 3.64
SHROOM4Q9ULL8 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC37.81■■■■□ 3.64
SHROOM4Q9ULL8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC37.81■■■■□ 3.64
SHROOM4Q9ULL8 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC37.81■■■■□ 3.64
SHROOM4Q9ULL8 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC37.81■■■■□ 3.64
SHROOM4Q9ULL8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC37.8■■■■□ 3.64
SHROOM4Q9ULL8 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 SAPCD2P2-201ENST00000431719 1174 ntBASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 DBP-204ENST00000599385 709 ntTSL 3 BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC37.79■■■■□ 3.64
SHROOM4Q9ULL8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 AP000550.4-202ENST00000639755 178 ntBASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC37.78■■■■□ 3.64
SHROOM4Q9ULL8 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 EGLN1P1-201ENST00000531623 762 ntBASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC37.77■■■■□ 3.64
SHROOM4Q9ULL8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC37.77■■■■□ 3.64
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms