Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDT1Q9H211 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDT1Q9H211 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDT1Q9H211 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDT1Q9H211 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDT1Q9H211 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.54■■□□□ 1.04
CDT1Q9H211 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CDT1Q9H211 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.54■■□□□ 1.04
CDT1Q9H211 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
CDT1Q9H211 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDT1Q9H211 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDT1Q9H211 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDT1Q9H211 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.53■■□□□ 1.04
CDT1Q9H211 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CDT1Q9H211 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.53■■□□□ 1.04
CDT1Q9H211 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CDT1Q9H211 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.53■■□□□ 1.04
CDT1Q9H211 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CDT1Q9H211 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.53■■□□□ 1.04
CDT1Q9H211 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CDT1Q9H211 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
CDT1Q9H211 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDT1Q9H211 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CDT1Q9H211 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.52■■□□□ 1.04
CDT1Q9H211 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.52■■□□□ 1.04
CDT1Q9H211 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CDT1Q9H211 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.52■■□□□ 1.04
CDT1Q9H211 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.52■■□□□ 1.04
CDT1Q9H211 KRT16P5-201ENST00000455284 522 ntBASIC21.52■■□□□ 1.04
CDT1Q9H211 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.52■■□□□ 1.04
CDT1Q9H211 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.52■■□□□ 1.04
CDT1Q9H211 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CDT1Q9H211 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.52■■□□□ 1.04
CDT1Q9H211 AC099778.1-201ENST00000568593 1911 ntBASIC21.52■■□□□ 1.04
CDT1Q9H211 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CDT1Q9H211 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDT1Q9H211 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.52■■□□□ 1.03
CDT1Q9H211 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
CDT1Q9H211 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CDT1Q9H211 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.52■■□□□ 1.03
CDT1Q9H211 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 AL691432.2-201ENST00000607222 2038 ntBASIC21.51■■□□□ 1.03
CDT1Q9H211 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.51■■□□□ 1.03
CDT1Q9H211 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.51■■□□□ 1.03
CDT1Q9H211 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.51■■□□□ 1.03
CDT1Q9H211 AP006587.1-201ENST00000534129 1502 ntBASIC21.51■■□□□ 1.03
CDT1Q9H211 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.51■■□□□ 1.03
CDT1Q9H211 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CDT1Q9H211 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CDT1Q9H211 AL596275.1-201ENST00000423464 877 ntBASIC21.51■■□□□ 1.03
CDT1Q9H211 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.51■■□□□ 1.03
CDT1Q9H211 RARRES2P10-201ENST00000564312 460 ntBASIC21.51■■□□□ 1.03
CDT1Q9H211 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CDT1Q9H211 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.51■■□□□ 1.03
CDT1Q9H211 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CDT1Q9H211 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.51■■□□□ 1.03
CDT1Q9H211 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.51■■□□□ 1.03
CDT1Q9H211 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.51■■□□□ 1.03
CDT1Q9H211 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDT1Q9H211 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
CDT1Q9H211 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDT1Q9H211 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms