Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
CFAP54Q96N23 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.56■□□□□ 0.72
CFAP54Q96N23 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CFAP54Q96N23 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.56■□□□□ 0.72
CFAP54Q96N23 AC117500.6-201ENST00000624871 588 ntBASIC19.56■□□□□ 0.72
CFAP54Q96N23 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CFAP54Q96N23 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 AL031008.1-201ENST00000619963 541 ntBASIC19.55■□□□□ 0.72
CFAP54Q96N23 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CFAP54Q96N23 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.55■□□□□ 0.72
CFAP54Q96N23 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 HOMER2P1-201ENST00000455653 964 ntBASIC19.54■□□□□ 0.72
CFAP54Q96N23 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CFAP54Q96N23 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CFAP54Q96N23 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 AP002469.2-201ENST00000531724 424 ntBASIC19.53■□□□□ 0.72
CFAP54Q96N23 PRELID1P1-202ENST00000567272 903 ntBASIC19.53■□□□□ 0.72
CFAP54Q96N23 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.53■□□□□ 0.72
CFAP54Q96N23 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.53■□□□□ 0.72
CFAP54Q96N23 PMS2P1-201ENST00000431037 1228 ntBASIC19.53■□□□□ 0.72
CFAP54Q96N23 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.53■□□□□ 0.72
CFAP54Q96N23 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.53■□□□□ 0.72
CFAP54Q96N23 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CFAP54Q96N23 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.53■□□□□ 0.72
CFAP54Q96N23 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.53■□□□□ 0.72
CFAP54Q96N23 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
CFAP54Q96N23 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CFAP54Q96N23 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CFAP54Q96N23 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.52■□□□□ 0.72
CFAP54Q96N23 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
CFAP54Q96N23 MIR3180-1-201ENST00000580374 94 ntBASIC19.52■□□□□ 0.72
CFAP54Q96N23 MIR3180-3-201ENST00000584616 94 ntBASIC19.52■□□□□ 0.72
CFAP54Q96N23 AL732292.2-201ENST00000609649 430 ntBASIC19.52■□□□□ 0.72
CFAP54Q96N23 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CFAP54Q96N23 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.52■□□□□ 0.72
CFAP54Q96N23 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CFAP54Q96N23 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CFAP54Q96N23 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.52■□□□□ 0.71
CFAP54Q96N23 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CFAP54Q96N23 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
CFAP54Q96N23 FAM220CP-201ENST00000395253 831 ntBASIC19.52■□□□□ 0.71
CFAP54Q96N23 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.71
CFAP54Q96N23 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CFAP54Q96N23 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms