Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 AC083880.1-201ENST00000608266 535 ntBASIC18.96■□□□□ 0.63
VMP1Q96GC9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.96■□□□□ 0.63
VMP1Q96GC9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VMP1Q96GC9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VMP1Q96GC9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.95■□□□□ 0.62
VMP1Q96GC9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 MIR2861-201ENST00000636310 90 ntBASIC18.94■□□□□ 0.62
VMP1Q96GC9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.94■□□□□ 0.62
VMP1Q96GC9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VMP1Q96GC9 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
VMP1Q96GC9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VMP1Q96GC9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.93■□□□□ 0.62
VMP1Q96GC9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.93■□□□□ 0.62
VMP1Q96GC9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VMP1Q96GC9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 PCDHAC2-203ENST00000615316 3011 ntBASIC18.93■□□□□ 0.62
VMP1Q96GC9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.93■□□□□ 0.62
VMP1Q96GC9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VMP1Q96GC9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VMP1Q96GC9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VMP1Q96GC9 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VMP1Q96GC9 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VMP1Q96GC9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VMP1Q96GC9 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VMP1Q96GC9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VMP1Q96GC9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VMP1Q96GC9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
VMP1Q96GC9 PLK5-205ENST00000642079 1969 ntBASIC18.92■□□□□ 0.62
VMP1Q96GC9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms