Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.33■□□□□ 0.84
TTC28Q96AY4 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TTC28Q96AY4 AC093323.1-202ENST00000635031 2045 ntBASIC20.32■□□□□ 0.84
TTC28Q96AY4 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TTC28Q96AY4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TTC28Q96AY4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TTC28Q96AY4 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TTC28Q96AY4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TTC28Q96AY4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TTC28Q96AY4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.32■□□□□ 0.84
TTC28Q96AY4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TTC28Q96AY4 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 HTR5BP-201ENST00000430851 1154 ntBASIC20.32■□□□□ 0.84
TTC28Q96AY4 POLD2P1-201ENST00000511220 997 ntBASIC20.32■□□□□ 0.84
TTC28Q96AY4 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
TTC28Q96AY4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
TTC28Q96AY4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TTC28Q96AY4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TTC28Q96AY4 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
TTC28Q96AY4 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TTC28Q96AY4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TTC28Q96AY4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TTC28Q96AY4 AL035633.1-201ENST00000406139 838 ntBASIC20.3■□□□□ 0.84
TTC28Q96AY4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.3■□□□□ 0.84
TTC28Q96AY4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.3■□□□□ 0.84
TTC28Q96AY4 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TTC28Q96AY4 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.3■□□□□ 0.84
TTC28Q96AY4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TTC28Q96AY4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.3■□□□□ 0.84
TTC28Q96AY4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.3■□□□□ 0.84
TTC28Q96AY4 SPDYE15P-201ENST00000424157 909 ntBASIC20.3■□□□□ 0.84
TTC28Q96AY4 AC005104.2-201ENST00000427818 678 ntBASIC20.3■□□□□ 0.84
TTC28Q96AY4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
TTC28Q96AY4 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
TTC28Q96AY4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TTC28Q96AY4 AC016734.2-201ENST00000624325 1377 ntBASIC20.29■□□□□ 0.84
TTC28Q96AY4 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TTC28Q96AY4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TTC28Q96AY4 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 HBZP1-201ENST00000354915 429 ntBASIC20.29■□□□□ 0.84
TTC28Q96AY4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
TTC28Q96AY4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 AC091304.2-201ENST00000564639 760 ntBASIC20.28■□□□□ 0.84
TTC28Q96AY4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.28■□□□□ 0.84
TTC28Q96AY4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TTC28Q96AY4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms