Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PTP4A1Q93096 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.81■□□□□ 0.44
PTP4A1Q93096 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.81■□□□□ 0.44
PTP4A1Q93096 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.81■□□□□ 0.44
PTP4A1Q93096 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PTP4A1Q93096 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.81■□□□□ 0.44
PTP4A1Q93096 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 TNXA-203ENST00000507684 2038 ntBASIC17.81■□□□□ 0.44
PTP4A1Q93096 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTP4A1Q93096 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
PTP4A1Q93096 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTP4A1Q93096 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.8■□□□□ 0.44
PTP4A1Q93096 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
PTP4A1Q93096 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.79■□□□□ 0.44
PTP4A1Q93096 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.79■□□□□ 0.44
PTP4A1Q93096 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.79■□□□□ 0.44
PTP4A1Q93096 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
PTP4A1Q93096 MFSD11-216ENST00000590393 1141 ntBASIC17.79■□□□□ 0.44
PTP4A1Q93096 AC100791.3-201ENST00000617619 330 ntBASIC17.79■□□□□ 0.44
PTP4A1Q93096 AC013268.1-206ENST00000638368 961 ntBASIC17.79■□□□□ 0.44
PTP4A1Q93096 AC112229.1-201ENST00000639295 961 ntBASIC17.79■□□□□ 0.44
PTP4A1Q93096 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.79■□□□□ 0.44
PTP4A1Q93096 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
PTP4A1Q93096 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTP4A1Q93096 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
PTP4A1Q93096 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 AC004408.2-201ENST00000623613 2777 ntBASIC17.78■□□□□ 0.44
PTP4A1Q93096 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 MCRIP2P1-201ENST00000394346 511 ntBASIC17.78■□□□□ 0.44
PTP4A1Q93096 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 AL137784.2-201ENST00000607332 1000 ntBASIC17.78■□□□□ 0.44
PTP4A1Q93096 IKBKGP1-201ENST00000612193 1073 ntBASIC17.78■□□□□ 0.44
PTP4A1Q93096 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTP4A1Q93096 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.78■□□□□ 0.44
PTP4A1Q93096 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms