Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 AC012306.2-201ENST00000609350 630 ntBASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 AC120498.8-201ENST00000614275 531 ntBASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 AL049637.2-201ENST00000641778 930 ntBASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-3Q8TAU0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
NKX2-3Q8TAU0 AL135905.2-201ENST00000584934 1404 ntBASIC23.58■■□□□ 1.36
NKX2-3Q8TAU0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
NKX2-3Q8TAU0 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC23.58■■□□□ 1.36
NKX2-3Q8TAU0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.58■■□□□ 1.36
NKX2-3Q8TAU0 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 POM121L13P-201ENST00000422362 380 ntBASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
NKX2-3Q8TAU0 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 THEM4-205ENST00000489410 643 ntTSL 2 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NKX2-3Q8TAU0 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC23.55■■□□□ 1.36
NKX2-3Q8TAU0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 KRT8P20-201ENST00000423953 1409 ntBASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 ARMC10P1-201ENST00000313754 855 ntBASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 REXO2-216ENST00000544196 452 ntTSL 3 BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 CD177P1-201ENST00000606252 935 ntBASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC23.54■■□□□ 1.36
NKX2-3Q8TAU0 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms