Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC24.33■■□□□ 1.49
USP48Q86UV5 AC145285.6-201ENST00000604632 637 ntBASIC24.33■■□□□ 1.49
USP48Q86UV5 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
USP48Q86UV5 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP48Q86UV5 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
USP48Q86UV5 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC24.33■■□□□ 1.48
USP48Q86UV5 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC24.33■■□□□ 1.48
USP48Q86UV5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP48Q86UV5 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP48Q86UV5 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP48Q86UV5 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC24.32■■□□□ 1.48
USP48Q86UV5 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC24.32■■□□□ 1.48
USP48Q86UV5 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC24.32■■□□□ 1.48
USP48Q86UV5 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC24.32■■□□□ 1.48
USP48Q86UV5 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC24.32■■□□□ 1.48
USP48Q86UV5 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC24.32■■□□□ 1.48
USP48Q86UV5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
USP48Q86UV5 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP48Q86UV5 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.32■■□□□ 1.48
USP48Q86UV5 KRT8P9-201ENST00000558927 1449 ntBASIC24.32■■□□□ 1.48
USP48Q86UV5 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC24.32■■□□□ 1.48
USP48Q86UV5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USP48Q86UV5 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC24.32■■□□□ 1.48
USP48Q86UV5 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC24.32■■□□□ 1.48
USP48Q86UV5 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP48Q86UV5 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP48Q86UV5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.32■■□□□ 1.48
USP48Q86UV5 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC24.31■■□□□ 1.48
USP48Q86UV5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC24.31■■□□□ 1.48
USP48Q86UV5 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
USP48Q86UV5 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
USP48Q86UV5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
USP48Q86UV5 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.31■■□□□ 1.48
USP48Q86UV5 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP48Q86UV5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
USP48Q86UV5 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
USP48Q86UV5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC24.3■■□□□ 1.48
USP48Q86UV5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC24.3■■□□□ 1.48
USP48Q86UV5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP48Q86UV5 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.3■■□□□ 1.48
USP48Q86UV5 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP48Q86UV5 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP48Q86UV5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC24.3■■□□□ 1.48
USP48Q86UV5 RNF146-204ENST00000476956 884 ntTSL 2 BASIC24.3■■□□□ 1.48
USP48Q86UV5 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC24.3■■□□□ 1.48
USP48Q86UV5 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP48Q86UV5 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP48Q86UV5 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
USP48Q86UV5 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP48Q86UV5 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP48Q86UV5 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC24.3■■□□□ 1.48
USP48Q86UV5 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP48Q86UV5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP48Q86UV5 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.29■■□□□ 1.48
USP48Q86UV5 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP48Q86UV5 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC24.29■■□□□ 1.48
USP48Q86UV5 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP48Q86UV5 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC24.29■■□□□ 1.48
USP48Q86UV5 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC24.29■■□□□ 1.48
USP48Q86UV5 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
USP48Q86UV5 Six3os1_6.1-201ENST00000620790 196 ntBASIC24.29■■□□□ 1.48
USP48Q86UV5 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC24.29■■□□□ 1.48
USP48Q86UV5 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC24.29■■□□□ 1.48
USP48Q86UV5 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP48Q86UV5 AL121603.2-201ENST00000557373 2117 ntBASIC24.29■■□□□ 1.48
USP48Q86UV5 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP48Q86UV5 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP48Q86UV5 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC24.29■■□□□ 1.48
USP48Q86UV5 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP48Q86UV5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
USP48Q86UV5 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC24.28■■□□□ 1.48
USP48Q86UV5 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP48Q86UV5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC24.28■■□□□ 1.48
USP48Q86UV5 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP48Q86UV5 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
USP48Q86UV5 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP48Q86UV5 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP48Q86UV5 KRT18P57-201ENST00000443599 1254 ntBASIC24.28■■□□□ 1.48
USP48Q86UV5 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC24.28■■□□□ 1.48
USP48Q86UV5 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
USP48Q86UV5 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
USP48Q86UV5 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC24.28■■□□□ 1.48
USP48Q86UV5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP48Q86UV5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP48Q86UV5 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP48Q86UV5 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms