Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.06■□□□□ 0.32
USF3Q68DE3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
USF3Q68DE3 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
USF3Q68DE3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USF3Q68DE3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.06■□□□□ 0.32
USF3Q68DE3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.06■□□□□ 0.32
USF3Q68DE3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.06■□□□□ 0.32
USF3Q68DE3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.06■□□□□ 0.32
USF3Q68DE3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.06■□□□□ 0.32
USF3Q68DE3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USF3Q68DE3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.06■□□□□ 0.32
USF3Q68DE3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USF3Q68DE3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.05■□□□□ 0.32
USF3Q68DE3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 PTBP1P-201ENST00000554374 1601 ntBASIC17.05■□□□□ 0.32
USF3Q68DE3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.05■□□□□ 0.32
USF3Q68DE3 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.05■□□□□ 0.32
USF3Q68DE3 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.05■□□□□ 0.32
USF3Q68DE3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.05■□□□□ 0.32
USF3Q68DE3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.05■□□□□ 0.32
USF3Q68DE3 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.05■□□□□ 0.32
USF3Q68DE3 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.05■□□□□ 0.32
USF3Q68DE3 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.05■□□□□ 0.32
USF3Q68DE3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USF3Q68DE3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USF3Q68DE3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.04■□□□□ 0.32
USF3Q68DE3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.04■□□□□ 0.32
USF3Q68DE3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.04■□□□□ 0.32
USF3Q68DE3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USF3Q68DE3 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 KRT8P36-201ENST00000489121 1440 ntBASIC17.04■□□□□ 0.32
USF3Q68DE3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.04■□□□□ 0.32
USF3Q68DE3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
USF3Q68DE3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USF3Q68DE3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USF3Q68DE3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USF3Q68DE3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USF3Q68DE3 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.03■□□□□ 0.32
USF3Q68DE3 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
USF3Q68DE3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
USF3Q68DE3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
USF3Q68DE3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.03■□□□□ 0.32
USF3Q68DE3 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.03■□□□□ 0.32
USF3Q68DE3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.03■□□□□ 0.32
USF3Q68DE3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.03■□□□□ 0.32
USF3Q68DE3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
USF3Q68DE3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF3Q68DE3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms