Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 KRT16P2-201ENST00000414673 1423 ntBASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 KRT18P21-201ENST00000515767 1272 ntBASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 LINC01023-201ENST00000606054 436 ntBASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 TCF3P1-201ENST00000423021 1937 ntBASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC16.4■□□□□ 0.22
PDLIM3Q53GG5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.39■□□□□ 0.22
PDLIM3Q53GG5 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 AC006058.3-201ENST00000606217 1069 ntBASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PDLIM3Q53GG5 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 AC020763.4-201ENST00000623414 4170 ntBASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PDLIM3Q53GG5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PDLIM3Q53GG5 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms