Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC026271.3-201ENST00000571884 352 ntBASIC23■■□□□ 1.27
HMGCS2P54868 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC23■■□□□ 1.27
HMGCS2P54868 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HMGCS2P54868 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC23■■□□□ 1.27
HMGCS2P54868 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC22.99■■□□□ 1.27
HMGCS2P54868 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGCS2P54868 AC018553.1-201ENST00000616682 1458 ntBASIC22.99■■□□□ 1.27
HMGCS2P54868 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGCS2P54868 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
HMGCS2P54868 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGCS2P54868 YBX1P10-201ENST00000444752 975 ntBASIC22.99■■□□□ 1.27
HMGCS2P54868 B3GAT3P1-201ENST00000471720 806 ntBASIC22.99■■□□□ 1.27
HMGCS2P54868 AC011506.1-201ENST00000474329 610 ntBASIC22.99■■□□□ 1.27
HMGCS2P54868 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGCS2P54868 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.99■■□□□ 1.27
HMGCS2P54868 RMI2-205ENST00000576027 818 ntTSL 2 BASIC22.99■■□□□ 1.27
HMGCS2P54868 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC22.99■■□□□ 1.27
HMGCS2P54868 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
HMGCS2P54868 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGCS2P54868 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HMGCS2P54868 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HMGCS2P54868 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
HMGCS2P54868 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
HMGCS2P54868 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HMGCS2P54868 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HMGCS2P54868 KRT16P6-202ENST00000425692 1426 ntBASIC22.99■■□□□ 1.27
HMGCS2P54868 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
HMGCS2P54868 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.98■■□□□ 1.27
HMGCS2P54868 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.98■■□□□ 1.27
HMGCS2P54868 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
HMGCS2P54868 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 GRAMD4P8-201ENST00000605465 1115 ntBASIC22.98■■□□□ 1.27
HMGCS2P54868 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.98■■□□□ 1.27
HMGCS2P54868 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC22.98■■□□□ 1.27
HMGCS2P54868 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.98■■□□□ 1.27
HMGCS2P54868 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 AC007225.1-201ENST00000566331 1836 ntBASIC22.98■■□□□ 1.27
HMGCS2P54868 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HMGCS2P54868 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.97■■□□□ 1.27
HMGCS2P54868 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC22.97■■□□□ 1.27
HMGCS2P54868 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGCS2P54868 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC22.97■■□□□ 1.27
HMGCS2P54868 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGCS2P54868 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC22.97■■□□□ 1.27
HMGCS2P54868 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
HMGCS2P54868 AC004980.1-204ENST00000429707 299 ntBASIC22.97■■□□□ 1.27
HMGCS2P54868 KRT18P16-201ENST00000510337 1294 ntBASIC22.97■■□□□ 1.27
HMGCS2P54868 AC010203.1-204ENST00000548782 407 ntBASIC22.97■■□□□ 1.27
HMGCS2P54868 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC22.97■■□□□ 1.27
HMGCS2P54868 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
HMGCS2P54868 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGCS2P54868 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.97■■□□□ 1.27
HMGCS2P54868 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGCS2P54868 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.96■■□□□ 1.27
HMGCS2P54868 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGCS2P54868 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGCS2P54868 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGCS2P54868 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC22.96■■□□□ 1.27
HMGCS2P54868 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC22.96■■□□□ 1.27
HMGCS2P54868 AC104076.2-201ENST00000448912 469 ntBASIC22.96■■□□□ 1.27
HMGCS2P54868 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
HMGCS2P54868 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
HMGCS2P54868 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
HMGCS2P54868 TPM1-226ENST00000560959 925 ntTSL 2 BASIC22.96■■□□□ 1.27
HMGCS2P54868 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
HMGCS2P54868 CLN6-221ENST00000637494 765 ntTSL 5 BASIC22.96■■□□□ 1.27
HMGCS2P54868 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.96■■□□□ 1.27
HMGCS2P54868 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGCS2P54868 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.96■■□□□ 1.27
HMGCS2P54868 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
HMGCS2P54868 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
HMGCS2P54868 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
HMGCS2P54868 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
HMGCS2P54868 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
HMGCS2P54868 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
HMGCS2P54868 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.95■■□□□ 1.26
HMGCS2P54868 TUBB8P6-201ENST00000436895 1288 ntBASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms