Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.41■□□□□ 0.22
HOXA1P49639 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA1P49639 AL162377.1-201ENST00000618844 1793 ntBASIC16.41■□□□□ 0.22
HOXA1P49639 AC099778.1-201ENST00000568593 1911 ntBASIC16.41■□□□□ 0.22
HOXA1P49639 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HOXA1P49639 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.4■□□□□ 0.22
HOXA1P49639 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC16.4■□□□□ 0.22
HOXA1P49639 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HOXA1P49639 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 MIR939-201ENST00000401314 82 ntBASIC16.4■□□□□ 0.22
HOXA1P49639 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC16.4■□□□□ 0.22
HOXA1P49639 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC16.4■□□□□ 0.22
HOXA1P49639 AL354811.1-201ENST00000610286 706 ntBASIC16.4■□□□□ 0.22
HOXA1P49639 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HOXA1P49639 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 KRT87P-202ENST00000534226 1464 ntBASIC16.4■□□□□ 0.22
HOXA1P49639 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.4■□□□□ 0.22
HOXA1P49639 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.4■□□□□ 0.22
HOXA1P49639 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.4■□□□□ 0.22
HOXA1P49639 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC16.4■□□□□ 0.22
HOXA1P49639 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HOXA1P49639 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
HOXA1P49639 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
HOXA1P49639 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXA1P49639 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXA1P49639 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HOXA1P49639 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXA1P49639 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HOXA1P49639 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HOXA1P49639 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
HOXA1P49639 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HOXA1P49639 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXA1P49639 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC16.39■□□□□ 0.21
HOXA1P49639 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC16.39■□□□□ 0.21
HOXA1P49639 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC16.39■□□□□ 0.21
HOXA1P49639 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXA1P49639 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HOXA1P49639 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
HOXA1P49639 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HOXA1P49639 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.39■□□□□ 0.21
HOXA1P49639 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HOXA1P49639 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXA1P49639 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXA1P49639 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXA1P49639 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXA1P49639 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXA1P49639 AC079598.2-202ENST00000546624 1451 ntBASIC16.38■□□□□ 0.21
HOXA1P49639 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXA1P49639 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXA1P49639 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXA1P49639 CPT2-209ENST00000636935 803 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXA1P49639 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXA1P49639 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HOXA1P49639 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HOXA1P49639 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC16.38■□□□□ 0.21
HOXA1P49639 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HOXA1P49639 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXA1P49639 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXA1P49639 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXA1P49639 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.37■□□□□ 0.21
HOXA1P49639 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HOXA1P49639 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
HOXA1P49639 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXA1P49639 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HOXA1P49639 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms