Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX2P48431 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX2P48431 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX2P48431 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.43■□□□□ 0.38
SOX2P48431 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SOX2P48431 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.43■□□□□ 0.38
SOX2P48431 SLC7A5P1-201ENST00000568957 537 ntBASIC17.43■□□□□ 0.38
SOX2P48431 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.43■□□□□ 0.38
SOX2P48431 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX2P48431 AL356652.1-201ENST00000615962 565 ntBASIC17.43■□□□□ 0.38
SOX2P48431 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.43■□□□□ 0.38
SOX2P48431 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SOX2P48431 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
SOX2P48431 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.43■□□□□ 0.38
SOX2P48431 AC090340.1-201ENST00000620778 4980 ntBASIC17.43■□□□□ 0.38
SOX2P48431 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX2P48431 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SOX2P48431 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.43■□□□□ 0.38
SOX2P48431 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX2P48431 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SOX2P48431 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.42■□□□□ 0.38
SOX2P48431 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
SOX2P48431 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SOX2P48431 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.42■□□□□ 0.38
SOX2P48431 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 AC123595.1-201ENST00000440769 1046 ntBASIC17.42■□□□□ 0.38
SOX2P48431 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.42■□□□□ 0.38
SOX2P48431 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.42■□□□□ 0.38
SOX2P48431 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SOX2P48431 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.42■□□□□ 0.38
SOX2P48431 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SOX2P48431 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SOX2P48431 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SOX2P48431 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.42■□□□□ 0.38
SOX2P48431 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SOX2P48431 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
SOX2P48431 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.41■□□□□ 0.38
SOX2P48431 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SOX2P48431 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SOX2P48431 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SOX2P48431 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SOX2P48431 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SOX2P48431 PGM5P4-201ENST00000421970 445 ntBASIC17.41■□□□□ 0.38
SOX2P48431 AC097381.1-201ENST00000429019 1296 ntBASIC17.41■□□□□ 0.38
SOX2P48431 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.41■□□□□ 0.38
SOX2P48431 KRT18P14-201ENST00000534205 1250 ntBASIC17.41■□□□□ 0.38
SOX2P48431 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SOX2P48431 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.41■□□□□ 0.38
SOX2P48431 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC17.41■□□□□ 0.38
SOX2P48431 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SOX2P48431 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.41■□□□□ 0.38
SOX2P48431 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SOX2P48431 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 502.9 ms