Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC22.41■■□□□ 1.18
CIITAP33076 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.41■■□□□ 1.18
CIITAP33076 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC22.41■■□□□ 1.18
CIITAP33076 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.41■■□□□ 1.18
CIITAP33076 UBE2SP1-201ENST00000450587 669 ntBASIC22.41■■□□□ 1.18
CIITAP33076 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
CIITAP33076 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.41■■□□□ 1.18
CIITAP33076 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.41■■□□□ 1.18
CIITAP33076 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.41■■□□□ 1.18
CIITAP33076 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CIITAP33076 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC22.41■■□□□ 1.18
CIITAP33076 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC22.4■■□□□ 1.18
CIITAP33076 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
CIITAP33076 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.4■■□□□ 1.18
CIITAP33076 PEX7-202ENST00000367756 680 ntTSL 3 BASIC22.4■■□□□ 1.18
CIITAP33076 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC22.4■■□□□ 1.18
CIITAP33076 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
CIITAP33076 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC22.4■■□□□ 1.18
CIITAP33076 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
CIITAP33076 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 NBPF21P-201ENST00000425093 1451 ntBASIC22.4■■□□□ 1.18
CIITAP33076 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CIITAP33076 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CIITAP33076 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CIITAP33076 TCF3P1-201ENST00000423021 1937 ntBASIC22.39■■□□□ 1.18
CIITAP33076 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC22.39■■□□□ 1.18
CIITAP33076 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
CIITAP33076 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CIITAP33076 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CIITAP33076 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CIITAP33076 AP001271.2-201ENST00000624018 1556 ntBASIC22.39■■□□□ 1.18
CIITAP33076 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CIITAP33076 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
CIITAP33076 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC22.39■■□□□ 1.17
CIITAP33076 RHOD-202ENST00000532559 538 ntTSL 3 BASIC22.39■■□□□ 1.17
CIITAP33076 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.39■■□□□ 1.17
CIITAP33076 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC22.39■■□□□ 1.17
CIITAP33076 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CIITAP33076 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CIITAP33076 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC22.39■■□□□ 1.17
CIITAP33076 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CIITAP33076 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
CIITAP33076 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CIITAP33076 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
CIITAP33076 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
CIITAP33076 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC22.38■■□□□ 1.17
CIITAP33076 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC22.38■■□□□ 1.17
CIITAP33076 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC22.38■■□□□ 1.17
CIITAP33076 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.38■■□□□ 1.17
CIITAP33076 FAM197Y4-202ENST00000622692 608 ntBASIC22.38■■□□□ 1.17
CIITAP33076 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CIITAP33076 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
CIITAP33076 AC009237.14-201ENST00000609975 1594 ntBASIC22.38■■□□□ 1.17
CIITAP33076 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.37■■□□□ 1.17
CIITAP33076 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CIITAP33076 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CIITAP33076 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.37■■□□□ 1.17
CIITAP33076 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CIITAP33076 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.37■■□□□ 1.17
CIITAP33076 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CIITAP33076 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CIITAP33076 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
CIITAP33076 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
CIITAP33076 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.37■■□□□ 1.17
CIITAP33076 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC22.37■■□□□ 1.17
CIITAP33076 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.37■■□□□ 1.17
CIITAP33076 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC22.37■■□□□ 1.17
CIITAP33076 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CIITAP33076 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CIITAP33076 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.37■■□□□ 1.17
CIITAP33076 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
CIITAP33076 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC22.36■■□□□ 1.17
CIITAP33076 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC22.36■■□□□ 1.17
CIITAP33076 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC22.36■■□□□ 1.17
CIITAP33076 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
CIITAP33076 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CIITAP33076 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms