Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A1P20908 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.16■□□□□ 0.66
COL5A1P20908 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.16■□□□□ 0.66
COL5A1P20908 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A1P20908 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A1P20908 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A1P20908 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.16■□□□□ 0.66
COL5A1P20908 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.16■□□□□ 0.66
COL5A1P20908 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.16■□□□□ 0.66
COL5A1P20908 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL5A1P20908 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
COL5A1P20908 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.16■□□□□ 0.66
COL5A1P20908 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.15■□□□□ 0.66
COL5A1P20908 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL5A1P20908 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.15■□□□□ 0.66
COL5A1P20908 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
COL5A1P20908 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.15■□□□□ 0.66
COL5A1P20908 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.15■□□□□ 0.66
COL5A1P20908 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
COL5A1P20908 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL5A1P20908 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL5A1P20908 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COL5A1P20908 KRT8P17-201ENST00000453110 1448 ntBASIC19.15■□□□□ 0.66
COL5A1P20908 EGLN1P1-201ENST00000531623 762 ntBASIC19.14■□□□□ 0.65
COL5A1P20908 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
COL5A1P20908 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A1P20908 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL5A1P20908 AP006587.1-201ENST00000534129 1502 ntBASIC19.14■□□□□ 0.65
COL5A1P20908 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A1P20908 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.14■□□□□ 0.65
COL5A1P20908 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A1P20908 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL5A1P20908 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.14■□□□□ 0.65
COL5A1P20908 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A1P20908 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL5A1P20908 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A1P20908 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL5A1P20908 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.14■□□□□ 0.65
COL5A1P20908 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.14■□□□□ 0.65
COL5A1P20908 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.13■□□□□ 0.65
COL5A1P20908 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
COL5A1P20908 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A1P20908 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A1P20908 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.13■□□□□ 0.65
COL5A1P20908 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A1P20908 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.13■□□□□ 0.65
COL5A1P20908 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.13■□□□□ 0.65
COL5A1P20908 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL5A1P20908 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A1P20908 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.13■□□□□ 0.65
COL5A1P20908 AC011506.1-201ENST00000474329 610 ntBASIC19.13■□□□□ 0.65
COL5A1P20908 AC063952.2-201ENST00000498792 1227 ntBASIC19.13■□□□□ 0.65
COL5A1P20908 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.13■□□□□ 0.65
COL5A1P20908 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.13■□□□□ 0.65
COL5A1P20908 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
COL5A1P20908 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A1P20908 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL5A1P20908 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
COL5A1P20908 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.12■□□□□ 0.65
COL5A1P20908 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
COL5A1P20908 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.12■□□□□ 0.65
COL5A1P20908 AK4P3-201ENST00000418260 669 ntBASIC19.12■□□□□ 0.65
COL5A1P20908 AC004980.1-204ENST00000429707 299 ntBASIC19.12■□□□□ 0.65
COL5A1P20908 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.12■□□□□ 0.65
COL5A1P20908 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.12■□□□□ 0.65
COL5A1P20908 AC097488.1-201ENST00000507834 756 ntBASIC19.12■□□□□ 0.65
COL5A1P20908 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.12■□□□□ 0.65
COL5A1P20908 KRT18P16-201ENST00000510337 1294 ntBASIC19.12■□□□□ 0.65
COL5A1P20908 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.12■□□□□ 0.65
COL5A1P20908 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.12■□□□□ 0.65
COL5A1P20908 LINC01238-205ENST00000567549 1107 ntBASIC19.12■□□□□ 0.65
COL5A1P20908 AC087388.1-201ENST00000571370 1112 ntBASIC19.12■□□□□ 0.65
COL5A1P20908 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
COL5A1P20908 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.12■□□□□ 0.65
COL5A1P20908 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL5A1P20908 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL5A1P20908 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.11■□□□□ 0.65
COL5A1P20908 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.11■□□□□ 0.65
COL5A1P20908 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
COL5A1P20908 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.11■□□□□ 0.65
COL5A1P20908 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL5A1P20908 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.11■□□□□ 0.65
COL5A1P20908 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms