Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.59□□□□□ -1.514e-6■■■□□ 15.6
YBX3P16989 PIK3CB-206ENST00000469284 3164 ntTSL 55.45□□□□□ -1.544e-6■■■□□ 15.6
YBX3P16989 SLC39A4-204ENST00000527148 684 ntTSL 227.11■■□□□ 1.936e-7■■■□□ 15.6
YBX3P16989 SLC39A4-207ENST00000531013 795 ntTSL 224.5■■□□□ 1.516e-7■■■□□ 15.6
YBX3P16989 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.26e-7■■■□□ 15.6
YBX3P16989 SLC39A4-206ENST00000530807 498 ntTSL 220.8■□□□□ 0.926e-7■■■□□ 15.6
YBX3P16989 SLC39A4-209ENST00000532718 668 ntTSL 1 (best)20.8■□□□□ 0.926e-7■■■□□ 15.6
YBX3P16989 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.87■□□□□ 0.776e-7■■■□□ 15.6
YBX3P16989 SLC39A4-208ENST00000531789 361 ntTSL 318.28■□□□□ 0.526e-7■■■□□ 15.6
YBX3P16989 SLC39A4-205ENST00000529462 2778 ntTSL 216.89■□□□□ 0.36e-7■■■□□ 15.6
YBX3P16989 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.265e-13■■■□□ 15.6
YBX3P16989 TMEM245-202ENST00000413712 1973 ntTSL 29.51□□□□□ -0.895e-13■■■□□ 15.6
YBX3P16989 TMEM245-205ENST00000491854 2435 ntTSL 27.71□□□□□ -1.185e-13■■■□□ 15.6
YBX3P16989 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.162e-8■■■□□ 15.6
YBX3P16989 NAA10-206ENST00000432089 599 ntTSL 326.2■■□□□ 1.787e-9■■■□□ 15.6
YBX3P16989 RPLP2-204ENST00000526222 350 ntTSL 214.74□□□□□ -0.051e-43■■■□□ 15.6
YBX3P16989 RPLP2-203ENST00000525722 489 ntTSL 214.74□□□□□ -0.051e-43■■■□□ 15.6
YBX3P16989 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC29.22■■■□□ 2.272e-14■■■□□ 15.6
YBX3P16989 CRTAP-201ENST00000320954 6630 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.52e-14■■■□□ 15.6
YBX3P16989 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.483e-7■■■□□ 15.6
YBX3P16989 MTCH2-203ENST00000530428 930 ntTSL 523.83■■□□□ 1.413e-7■■■□□ 15.6
YBX3P16989 MTCH2-206ENST00000539759 581 ntTSL 58.36□□□□□ -1.073e-7■■■□□ 15.6
YBX3P16989 MTCH2-202ENST00000525649 599 ntTSL 26.4□□□□□ -1.384e-7■■■□□ 15.6
YBX3P16989 POLR1A-203ENST00000409681 6454 ntTSL 5 BASIC10.76□□□□□ -0.691e-6■■■□□ 15.6
YBX3P16989 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.351e-6■■■□□ 15.6
YBX3P16989 STXBP5-202ENST00000367475 521 ntTSL 59.48□□□□□ -0.896e-7■■■□□ 15.6
YBX3P16989 STXBP5-205ENST00000392291 791 ntTSL 57.6□□□□□ -1.196e-7■■■□□ 15.6
YBX3P16989 SLC43A3-226ENST00000625097 1796 nt9.29□□□□□ -0.921e-25■■■□□ 15.6
YBX3P16989 BUD31-209ENST00000496696 585 ntTSL 25.79□□□□□ -1.489e-8■■■□□ 15.6
YBX3P16989 FADS1-203ENST00000424501 926 ntTSL 317.93■□□□□ 0.463e-13■■■□□ 15.6
YBX3P16989 SEC14L1-224ENST00000589827 1791 ntTSL 215.43■□□□□ 0.063e-6■■■□□ 15.6
YBX3P16989 SEC14L1-212ENST00000585618 2712 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.423e-6■■■□□ 15.6
YBX3P16989 NPRL3-213ENST00000621703 2812 ntTSL 1 (best)18.23■□□□□ 0.514e-6■■■□□ 15.5
YBX3P16989 EHMT2-209ENST00000477678 679 ntTSL 218■□□□□ 0.474e-6■■■□□ 15.5
YBX3P16989 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.434e-6■■■□□ 15.5
YBX3P16989 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.94■□□□□ 0.34e-6■■■□□ 15.5
YBX3P16989 NPRL3-214ENST00000622194 2981 ntTSL 516.88■□□□□ 0.294e-6■■■□□ 15.5
YBX3P16989 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.014e-6■■■□□ 15.5
YBX3P16989 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.444e-6■■■□□ 15.5
YBX3P16989 ALKBH3-209ENST00000532410 648 ntTSL 511.86□□□□□ -0.519e-8■■■□□ 15.5
YBX3P16989 ALKBH3-208ENST00000532129 725 ntTSL 29.71□□□□□ -0.869e-8■■■□□ 15.5
YBX3P16989 ALKBH3-205ENST00000529434 682 ntTSL 28.51□□□□□ -1.059e-8■■■□□ 15.5
YBX3P16989 LAMB1-212ENST00000479448 304 ntTSL 315.85■□□□□ 0.135e-11■■■□□ 15.5
YBX3P16989 LAMB1-211ENST00000476039 653 ntTSL 214.92□□□□□ -0.022e-8■■■□□ 15.5
YBX3P16989 TLK1-203ENST00000409443 2783 ntTSL 216.68■□□□□ 0.266e-9■■■□□ 15.5
YBX3P16989 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC13.52□□□□□ -0.256e-9■■■□□ 15.5
YBX3P16989 TLK1-205ENST00000431350 5663 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.276e-9■■■□□ 15.5
YBX3P16989 TLK1-201ENST00000359766 4321 ntTSL 512.05□□□□□ -0.486e-9■■■□□ 15.5
YBX3P16989 DOCK8-202ENST00000382331 1922 ntTSL 1 (best) BASIC10.64□□□□□ -0.711e-8■■■□□ 15.5
YBX3P16989 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC5.95□□□□□ -1.466e-9■■■□□ 15.5
YBX3P16989 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.76□□□□□ -1.496e-9■■■□□ 15.5
YBX3P16989 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC26.05■■□□□ 1.764e-6■■■□□ 15.5
YBX3P16989 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.48■■□□□ 1.034e-6■■■□□ 15.5
YBX3P16989 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.9■□□□□ 0.784e-6■■■□□ 15.5
YBX3P16989 NFS1-205ENST00000413203 646 ntTSL 517.91■□□□□ 0.464e-6■■■□□ 15.5
YBX3P16989 NFS1-208ENST00000440385 1794 ntTSL 516.6■□□□□ 0.254e-6■■■□□ 15.5
YBX3P16989 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.024e-6■■■□□ 15.5
YBX3P16989 BSCL2-215ENST00000468505 547 ntTSL 216.53■□□□□ 0.245e-6■■■□□ 15.5
YBX3P16989 BSCL2-204ENST00000403098 326 ntTSL 55.72□□□□□ -1.495e-6■■■□□ 15.5
YBX3P16989 CTDNEP1-206ENST00000571409 741 ntTSL 540.44■■■■■ 4.063e-6■■■□□ 15.5
YBX3P16989 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC24.52■■□□□ 1.523e-6■■■□□ 15.5
YBX3P16989 CTDNEP1-211ENST00000575783 876 ntTSL 523.42■■□□□ 1.343e-6■■■□□ 15.5
YBX3P16989 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.5■■□□□ 1.035e-6■■■□□ 15.5
YBX3P16989 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.18■□□□□ 0.55e-6■■■□□ 15.5
YBX3P16989 TUBGCP3-206ENST00000483532 712 ntTSL 517.63■□□□□ 0.415e-6■■■□□ 15.5
YBX3P16989 CTDNEP1-202ENST00000570380 506 ntTSL 515.25■□□□□ 0.033e-6■■■□□ 15.5
YBX3P16989 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.155e-6■■■□□ 15.5
YBX3P16989 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.582e-7■■■□□ 15.5
YBX3P16989 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.382e-7■■■□□ 15.5
YBX3P16989 CD59-205ENST00000437761 758 ntAPPRIS P2 TSL 4 BASIC15.58■□□□□ 0.082e-7■■■□□ 15.5
YBX3P16989 CD59-214ENST00000534312 572 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.052e-7■■■□□ 15.5
YBX3P16989 CD59-204ENST00000426650 741 ntAPPRIS P2 TSL 3 BASIC14.02□□□□□ -0.172e-7■■■□□ 15.5
YBX3P16989 CD59-208ENST00000527577 686 ntAPPRIS P2 TSL 3 BASIC13.55□□□□□ -0.242e-7■■■□□ 15.5
YBX3P16989 CD59-207ENST00000525763 789 ntTSL 313.44□□□□□ -0.262e-7■■■□□ 15.5
YBX3P16989 CD59-213ENST00000533403 1847 ntTSL 3 BASIC12.33□□□□□ -0.442e-7■■■□□ 15.5
YBX3P16989 CD59-209ENST00000527926 633 ntTSL 311.82□□□□□ -0.522e-7■■■□□ 15.5
YBX3P16989 CD59-202ENST00000395850 1889 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.562e-7■■■□□ 15.5
YBX3P16989 CD59-206ENST00000445143 825 ntAPPRIS P2 TSL 3 BASIC10.55□□□□□ -0.722e-7■■■□□ 15.5
YBX3P16989 CD59-203ENST00000415002 1878 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.792e-7■■■□□ 15.5
YBX3P16989 CD59-211ENST00000528987 3716 ntTSL 1 (best)5.84□□□□□ -1.472e-7■■■□□ 15.5
YBX3P16989 NDFIP2-204ENST00000494647 344 ntTSL 56.15□□□□□ -1.421e-6■■■□□ 15.5
YBX3P16989 CLIC2-203ENST00000465553 902 ntTSL 38.56□□□□□ -1.049e-7■■■□□ 15.5
YBX3P16989 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.921e-10■■■□□ 15.5
YBX3P16989 GTSF1-208ENST00000552395 671 ntTSL 510.95□□□□□ -0.661e-10■■■□□ 15.5
YBX3P16989 GTSF1-204ENST00000546931 902 ntTSL 57.78□□□□□ -1.161e-10■■■□□ 15.5
YBX3P16989 MYH9-203ENST00000456729 449 ntTSL 316.55■□□□□ 0.244e-9■■■□□ 15.5
YBX3P16989 DDX10-203ENST00000526794 6707 ntTSL 1 (best) BASIC9.67□□□□□ -0.861e-6■■■□□ 15.5
YBX3P16989 MMADHC-201ENST00000303319 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.323e-7■■■□□ 15.5
YBX3P16989 MMADHC-202ENST00000422782 1462 ntTSL 5 BASIC9.17□□□□□ -0.943e-7■■■□□ 15.5
YBX3P16989 NCAPG2-210ENST00000491792 581 ntTSL 315.92■□□□□ 0.142e-6■■■□□ 15.5
YBX3P16989 ERAL1-207ENST00000580917 850 ntTSL 316.45■□□□□ 0.221e-6■■■□□ 15.5
YBX3P16989 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC20.24■□□□□ 0.832e-10■■■□□ 15.5
YBX3P16989 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.182e-10■■■□□ 15.5
YBX3P16989 CCNB2-204ENST00000561077 687 ntTSL 514.32□□□□□ -0.122e-10■■■□□ 15.5
YBX3P16989 ANAPC5-208ENST00000535482 2077 ntTSL 2 BASIC8.72□□□□□ -1.012e-6■■■□□ 15.5
YBX3P16989 CCNB2-205ENST00000621385 2503 ntTSL 1 (best) BASIC8.4□□□□□ -1.072e-10■■■□□ 15.5
YBX3P16989 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.73■□□□□ 0.273e-8■■■□□ 15.5
YBX3P16989 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.193e-8■■■□□ 15.5
YBX3P16989 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.92■□□□□ 0.143e-8■■■□□ 15.5
YBX3P16989 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.89■□□□□ 0.133e-8■■■□□ 15.5
Retrieved 100 of 29,075 protein–RNA pairs in 475.9 ms