Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CLDN9O95484 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN9O95484 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN9O95484 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.2■□□□□ 0.66
CLDN9O95484 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.2■□□□□ 0.66
CLDN9O95484 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CLDN9O95484 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.19■□□□□ 0.66
CLDN9O95484 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.19■□□□□ 0.66
CLDN9O95484 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.19■□□□□ 0.66
CLDN9O95484 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
CLDN9O95484 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CLDN9O95484 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.19■□□□□ 0.66
CLDN9O95484 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLDN9O95484 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLDN9O95484 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CLDN9O95484 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 AC007952.6-201ENST00000573168 2673 ntBASIC19.18■□□□□ 0.66
CLDN9O95484 AC003957.1-201ENST00000625108 2673 ntBASIC19.18■□□□□ 0.66
CLDN9O95484 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.18■□□□□ 0.66
CLDN9O95484 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 GPX1P1-201ENST00000388829 606 ntBASIC19.18■□□□□ 0.66
CLDN9O95484 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.18■□□□□ 0.66
CLDN9O95484 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CLDN9O95484 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.18■□□□□ 0.66
CLDN9O95484 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.18■□□□□ 0.66
CLDN9O95484 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CLDN9O95484 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.18■□□□□ 0.66
CLDN9O95484 TREX1-205ENST00000625293 1783 ntBASIC19.18■□□□□ 0.66
CLDN9O95484 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.18■□□□□ 0.66
CLDN9O95484 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CLDN9O95484 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.18■□□□□ 0.66
CLDN9O95484 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.18■□□□□ 0.66
CLDN9O95484 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLDN9O95484 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN9O95484 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.17■□□□□ 0.66
CLDN9O95484 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN9O95484 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN9O95484 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
CLDN9O95484 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN9O95484 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.17■□□□□ 0.66
CLDN9O95484 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CLDN9O95484 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.17■□□□□ 0.66
CLDN9O95484 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.17■□□□□ 0.66
CLDN9O95484 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.17■□□□□ 0.66
CLDN9O95484 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
CLDN9O95484 PHGDH-210ENST00000641115 1638 ntBASIC19.17■□□□□ 0.66
CLDN9O95484 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CLDN9O95484 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.16■□□□□ 0.66
CLDN9O95484 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.16■□□□□ 0.66
CLDN9O95484 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.16■□□□□ 0.66
CLDN9O95484 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.16■□□□□ 0.66
CLDN9O95484 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.16■□□□□ 0.66
CLDN9O95484 AL121832.2-201ENST00000610979 668 ntBASIC19.16■□□□□ 0.66
CLDN9O95484 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CLDN9O95484 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CLDN9O95484 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CLDN9O95484 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN9O95484 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms