Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS4BO75351 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS4BO75351 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.42■□□□□ 0.7
VPS4BO75351 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS4BO75351 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS4BO75351 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS4BO75351 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
VPS4BO75351 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS4BO75351 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4BO75351 AL158211.5-201ENST00000623583 2518 ntBASIC19.42■□□□□ 0.7
VPS4BO75351 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS4BO75351 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
VPS4BO75351 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS4BO75351 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
VPS4BO75351 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS4BO75351 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS4BO75351 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS4BO75351 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS4BO75351 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VPS4BO75351 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.41■□□□□ 0.7
VPS4BO75351 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VPS4BO75351 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
VPS4BO75351 AC013268.1-206ENST00000638368 961 ntBASIC19.41■□□□□ 0.7
VPS4BO75351 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS4BO75351 AC112229.1-201ENST00000639295 961 ntBASIC19.41■□□□□ 0.7
VPS4BO75351 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VPS4BO75351 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.41■□□□□ 0.7
VPS4BO75351 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 AC018445.3-201ENST00000624177 1945 ntBASIC19.41■□□□□ 0.7
VPS4BO75351 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VPS4BO75351 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4BO75351 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS4BO75351 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS4BO75351 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VPS4BO75351 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS4BO75351 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4BO75351 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4BO75351 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS4BO75351 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
VPS4BO75351 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS4BO75351 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
VPS4BO75351 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS4BO75351 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VPS4BO75351 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS4BO75351 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS4BO75351 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4BO75351 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS4BO75351 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VPS4BO75351 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4BO75351 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS4BO75351 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS4BO75351 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS4BO75351 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.39■□□□□ 0.7
VPS4BO75351 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS4BO75351 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.39■□□□□ 0.7
VPS4BO75351 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.39■□□□□ 0.7
VPS4BO75351 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
VPS4BO75351 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
VPS4BO75351 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4BO75351 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS4BO75351 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4BO75351 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS4BO75351 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS4BO75351 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.39■□□□□ 0.69
VPS4BO75351 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS4BO75351 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
VPS4BO75351 AC008694.1-202ENST00000636953 945 ntBASIC19.39■□□□□ 0.69
VPS4BO75351 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4BO75351 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4BO75351 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4BO75351 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4BO75351 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VPS4BO75351 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4BO75351 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS4BO75351 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS4BO75351 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS4BO75351 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS4BO75351 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS4BO75351 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms