Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC3O75056 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.45■□□□□ 0.7
SDC3O75056 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC3O75056 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SDC3O75056 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.44■□□□□ 0.7
SDC3O75056 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC3O75056 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC3O75056 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SDC3O75056 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC3O75056 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.44■□□□□ 0.7
SDC3O75056 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SDC3O75056 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.44■□□□□ 0.7
SDC3O75056 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.44■□□□□ 0.7
SDC3O75056 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.44■□□□□ 0.7
SDC3O75056 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC3O75056 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SDC3O75056 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SDC3O75056 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.44■□□□□ 0.7
SDC3O75056 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC3O75056 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC3O75056 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
SDC3O75056 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC3O75056 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.43■□□□□ 0.7
SDC3O75056 NIFKP9-201ENST00000419265 221 ntBASIC19.43■□□□□ 0.7
SDC3O75056 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC3O75056 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC3O75056 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.43■□□□□ 0.7
SDC3O75056 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.43■□□□□ 0.7
SDC3O75056 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
SDC3O75056 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.43■□□□□ 0.7
SDC3O75056 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDC3O75056 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
SDC3O75056 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SDC3O75056 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC3O75056 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SDC3O75056 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SDC3O75056 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.42■□□□□ 0.7
SDC3O75056 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.42■□□□□ 0.7
SDC3O75056 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SDC3O75056 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDC3O75056 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.42■□□□□ 0.7
SDC3O75056 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.42■□□□□ 0.7
SDC3O75056 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SDC3O75056 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SDC3O75056 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SDC3O75056 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SDC3O75056 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SDC3O75056 SLC25A24-204ENST00000569674 2357 ntBASIC19.42■□□□□ 0.7
SDC3O75056 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SDC3O75056 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.42■□□□□ 0.7
SDC3O75056 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC3O75056 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC3O75056 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.41■□□□□ 0.7
SDC3O75056 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC3O75056 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC3O75056 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.41■□□□□ 0.7
SDC3O75056 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC3O75056 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.41■□□□□ 0.7
SDC3O75056 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 KRT16P1-201ENST00000399124 1418 ntBASIC19.41■□□□□ 0.7
SDC3O75056 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC3O75056 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC3O75056 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
SDC3O75056 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.4■□□□□ 0.7
SDC3O75056 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.4■□□□□ 0.7
SDC3O75056 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC3O75056 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SDC3O75056 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
SDC3O75056 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.4■□□□□ 0.7
SDC3O75056 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC3O75056 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC3O75056 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.4■□□□□ 0.7
SDC3O75056 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SDC3O75056 KSR1P1-201ENST00000446298 240 ntBASIC19.4■□□□□ 0.7
SDC3O75056 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SDC3O75056 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.4■□□□□ 0.7
SDC3O75056 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.4■□□□□ 0.7
SDC3O75056 AC145285.6-201ENST00000604632 637 ntBASIC19.4■□□□□ 0.7
SDC3O75056 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC3O75056 AP006587.1-201ENST00000534129 1502 ntBASIC19.4■□□□□ 0.7
SDC3O75056 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms