Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC25.11■■□□□ 1.61
CACNA1FO60840 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC25.11■■□□□ 1.61
CACNA1FO60840 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC25.11■■□□□ 1.61
CACNA1FO60840 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 F2R-202ENST00000505600 442 ntTSL 2 BASIC25.11■■□□□ 1.61
CACNA1FO60840 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
CACNA1FO60840 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC25.11■■□□□ 1.61
CACNA1FO60840 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC25.11■■□□□ 1.61
CACNA1FO60840 AC009237.14-201ENST00000609975 1594 ntBASIC25.11■■□□□ 1.61
CACNA1FO60840 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CACNA1FO60840 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CACNA1FO60840 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CACNA1FO60840 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC25.1■■□□□ 1.61
CACNA1FO60840 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC25.1■■□□□ 1.61
CACNA1FO60840 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC25.1■■□□□ 1.61
CACNA1FO60840 REXO2-216ENST00000544196 452 ntTSL 3 BASIC25.1■■□□□ 1.61
CACNA1FO60840 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
CACNA1FO60840 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
CACNA1FO60840 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CACNA1FO60840 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
CACNA1FO60840 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CACNA1FO60840 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CACNA1FO60840 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
CACNA1FO60840 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC25.1■■□□□ 1.61
CACNA1FO60840 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC25.09■■□□□ 1.61
CACNA1FO60840 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CACNA1FO60840 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
CACNA1FO60840 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC25.09■■□□□ 1.61
CACNA1FO60840 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC25.09■■□□□ 1.61
CACNA1FO60840 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC25.09■■□□□ 1.61
CACNA1FO60840 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC25.09■■□□□ 1.61
CACNA1FO60840 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CACNA1FO60840 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CACNA1FO60840 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CACNA1FO60840 AP006587.1-201ENST00000534129 1502 ntBASIC25.09■■□□□ 1.61
CACNA1FO60840 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CACNA1FO60840 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC25.09■■□□□ 1.61
CACNA1FO60840 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CACNA1FO60840 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
CACNA1FO60840 KRT18P16-201ENST00000510337 1294 ntBASIC25.09■■□□□ 1.61
CACNA1FO60840 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC25.09■■□□□ 1.61
CACNA1FO60840 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CACNA1FO60840 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
CACNA1FO60840 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC25.08■■□□□ 1.61
CACNA1FO60840 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC25.08■■□□□ 1.61
CACNA1FO60840 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC25.08■■□□□ 1.61
CACNA1FO60840 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC25.08■■□□□ 1.61
CACNA1FO60840 RPS2P55-201ENST00000397318 883 ntBASIC25.08■■□□□ 1.61
CACNA1FO60840 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC25.08■■□□□ 1.61
CACNA1FO60840 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC25.08■■□□□ 1.61
CACNA1FO60840 AC107956.1-201ENST00000494359 873 ntBASIC25.08■■□□□ 1.61
CACNA1FO60840 AL355075.4-201ENST00000554988 638 ntBASIC25.08■■□□□ 1.61
CACNA1FO60840 KRT16P1-201ENST00000399124 1418 ntBASIC25.08■■□□□ 1.61
CACNA1FO60840 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CACNA1FO60840 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CACNA1FO60840 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CACNA1FO60840 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CACNA1FO60840 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CACNA1FO60840 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CACNA1FO60840 AL135905.2-201ENST00000584934 1404 ntBASIC25.07■■□□□ 1.6
CACNA1FO60840 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC25.07■■□□□ 1.6
CACNA1FO60840 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC25.07■■□□□ 1.6
CACNA1FO60840 DHDH-203ENST00000522614 776 ntTSL 5 BASIC25.07■■□□□ 1.6
CACNA1FO60840 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC25.07■■□□□ 1.6
CACNA1FO60840 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1FO60840 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC25.07■■□□□ 1.6
CACNA1FO60840 AL049637.2-201ENST00000641778 930 ntBASIC25.07■■□□□ 1.6
CACNA1FO60840 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC25.07■■□□□ 1.6
CACNA1FO60840 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1FO60840 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1FO60840 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC25.07■■□□□ 1.6
CACNA1FO60840 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1FO60840 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC25.07■■□□□ 1.6
CACNA1FO60840 GOLGA2P11-201ENST00000562660 1621 ntBASIC25.07■■□□□ 1.6
CACNA1FO60840 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1FO60840 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC25.07■■□□□ 1.6
CACNA1FO60840 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC25.07■■□□□ 1.6
CACNA1FO60840 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
CACNA1FO60840 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1FO60840 AL391422.3-201ENST00000603791 2761 ntBASIC25.07■■□□□ 1.6
CACNA1FO60840 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1FO60840 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1FO60840 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
CACNA1FO60840 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
CACNA1FO60840 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
CACNA1FO60840 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CACNA1FO60840 PEX7-202ENST00000367756 680 ntTSL 3 BASIC25.06■■□□□ 1.6
CACNA1FO60840 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CACNA1FO60840 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC25.06■■□□□ 1.6
CACNA1FO60840 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.06■■□□□ 1.6
CACNA1FO60840 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC25.06■■□□□ 1.6
CACNA1FO60840 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CACNA1FO60840 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC25.06■■□□□ 1.6
CACNA1FO60840 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC25.06■■□□□ 1.6
CACNA1FO60840 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms