Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
TRAV4A0A0B4J268 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 AL512625.2-201ENST00000417533 625 ntBASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 AC010980.2-201ENST00000587099 1412 ntBASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TRAV4A0A0B4J268 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 GLI3-203ENST00000437480 451 ntTSL 2 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 BRWD1-AS2-201ENST00000603064 1028 ntBASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 AL031963.3-201ENST00000606441 850 ntBASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 AL137784.2-201ENST00000607332 1000 ntBASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 PCDHAC2-203ENST00000615316 3011 ntBASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TRAV4A0A0B4J268 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 TMEM179-206ENST00000616017 1645 ntBASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 KRT8P20-201ENST00000423953 1409 ntBASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 KRT16P6-202ENST00000425692 1426 ntBASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 KRT8P17-201ENST00000453110 1448 ntBASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TRAV4A0A0B4J268 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TRAV4A0A0B4J268 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC14.27□□□□□ -0.13
TRAV4A0A0B4J268 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TRAV4A0A0B4J268 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC14.27□□□□□ -0.13
TRAV4A0A0B4J268 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms