Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.52■□□□□ 0.07
TRAV1-1A0A0B4J248 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 PTCHD3P2-201ENST00000424937 1205 ntBASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 AK3-203ENST00000447596 705 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 AL031598.1-201ENST00000561511 1773 ntBASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 AL161938.1-201ENST00000569833 2180 ntBASIC15.51■□□□□ 0.07
TRAV1-1A0A0B4J248 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 AC068880.1-201ENST00000507289 2297 ntBASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 WIZP1-201ENST00000531444 2299 ntBASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV1-1A0A0B4J248 AC093525.10-201ENST00000625130 1569 ntBASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 SRD5A1P1-201ENST00000442297 786 ntBASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 AC008175.2-201ENST00000612840 297 ntBASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV1-1A0A0B4J248 MKRN4P-201ENST00000444706 1521 ntBASIC15.48■□□□□ 0.07
TRAV1-1A0A0B4J248 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms