Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
SCN11AQ9UI33 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC8.18□□□□□ -1.1
SCN11AQ9UI33 AC138915.4-201ENST00000565549 4147 ntBASIC8.18□□□□□ -1.1
SCN11AQ9UI33 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
SCN11AQ9UI33 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC8.18□□□□□ -1.1
SCN11AQ9UI33 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
SCN11AQ9UI33 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC8.18□□□□□ -1.1
SCN11AQ9UI33 AC091305.2-201ENST00000624049 1576 ntBASIC8.18□□□□□ -1.1
SCN11AQ9UI33 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC8.18□□□□□ -1.1
SCN11AQ9UI33 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AL645936.1-201ENST00000441979 518 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 SUMO2P1-206ENST00000445436 284 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AL139156.3-201ENST00000454802 394 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 IGKV1D-22-201ENST00000518953 324 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 MED21-206ENST00000546323 575 ntTSL 3 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 NPIPB1P-202ENST00000588786 828 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AC008521.2-201ENST00000591021 259 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 MTCO1P28-201ENST00000574177 1528 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 RNF145-205ENST00000518802 2603 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AC009135.2-201ENST00000624136 1768 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 OR2M1P-201ENST00000318104 951 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 RNU1-150P-201ENST00000362491 162 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AC009500.1-201ENST00000420684 583 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 RPL7AP14-201ENST00000424041 802 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AL391987.1-201ENST00000441025 200 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 RPL6P30-201ENST00000443382 862 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 AC105342.1-201ENST00000378334 6848 ntBASIC8.17□□□□□ -1.1
SCN11AQ9UI33 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC8.17□□□□□ -1.1
SCN11AQ9UI33 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 RN7SKP229-201ENST00000410465 302 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 IGLV3-4-201ENST00000432300 244 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 ATP6V1E1P1-201ENST00000439215 681 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 AL512593.1-201ENST00000444758 779 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 VPS25P1-201ENST00000455691 508 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 AC098847.1-201ENST00000473094 348 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 RN7SL177P-201ENST00000476596 299 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 SNORD46.2-201ENST00000516021 102 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 MIR3189-201ENST00000578735 73 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 AL513218.1-201ENST00000606527 391 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC8.16□□□□□ -1.1
SCN11AQ9UI33 OXSM-209ENST00000626005 309 ntTSL 3 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC8.16□□□□□ -1.1
SCN11AQ9UI33 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 SEPHS1P4-201ENST00000446112 1176 ntBASIC8.15□□□□□ -1.1
SCN11AQ9UI33 CEACAMP5-201ENST00000448037 961 ntBASIC8.15□□□□□ -1.1
SCN11AQ9UI33 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 RPL34P33-201ENST00000486062 334 ntBASIC8.15□□□□□ -1.1
SCN11AQ9UI33 RN7SL101P-201ENST00000496350 279 ntBASIC8.15□□□□□ -1.1
SCN11AQ9UI33 AC090236.2-201ENST00000587933 1101 ntBASIC8.15□□□□□ -1.1
SCN11AQ9UI33 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 AC100767.2-201ENST00000604840 693 ntBASIC8.15□□□□□ -1.1
SCN11AQ9UI33 AC022106.1-201ENST00000612834 766 ntBASIC8.15□□□□□ -1.1
SCN11AQ9UI33 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC8.15□□□□□ -1.1
SCN11AQ9UI33 MIR4302-201ENST00000638058 60 ntBASIC8.15□□□□□ -1.1
SCN11AQ9UI33 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms