Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
HOXD4P09016 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC6.15□□□□□ -1.42
HOXD4P09016 AC092601.1-201ENST00000444526 383 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 TIMM8BP2-201ENST00000445940 251 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 CCNJP1-201ENST00000450600 1149 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 RBMY2HP-201ENST00000457961 720 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 PGBD4P1-201ENST00000473644 407 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 AC015524.1-201ENST00000491585 472 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 AC021146.11-201ENST00000503319 491 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC6.15□□□□□ -1.42
HOXD4P09016 AC112225.1-201ENST00000508230 297 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 SNX18P23-201ENST00000510867 677 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 AC087273.2-201ENST00000519038 634 ntTSL 3 BASIC6.15□□□□□ -1.42
HOXD4P09016 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.15□□□□□ -1.42
HOXD4P09016 SETP17-201ENST00000534163 817 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC6.15□□□□□ -1.42
HOXD4P09016 AC121758.1-202ENST00000556917 658 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.15□□□□□ -1.42
HOXD4P09016 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC6.15□□□□□ -1.42
HOXD4P09016 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC6.15□□□□□ -1.42
HOXD4P09016 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC6.15□□□□□ -1.42
HOXD4P09016 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 GAPDHP41-201ENST00000613707 975 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 AC068213.1-201ENST00000625124 226 ntBASIC6.15□□□□□ -1.42
HOXD4P09016 PFKM-232ENST00000629846 381 ntTSL 4 BASIC6.15□□□□□ -1.42
HOXD4P09016 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.15□□□□□ -1.43
HOXD4P09016 NCOA4P2-201ENST00000340589 1813 ntBASIC6.15□□□□□ -1.43
HOXD4P09016 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
HOXD4P09016 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.15□□□□□ -1.43
HOXD4P09016 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
HOXD4P09016 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXD4P09016 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
HOXD4P09016 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.15□□□□□ -1.43
HOXD4P09016 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXD4P09016 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
HOXD4P09016 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
HOXD4P09016 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
HOXD4P09016 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXD4P09016 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 RNA5SP512-201ENST00000364550 120 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
HOXD4P09016 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 RPL31-202ENST00000409000 641 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXD4P09016 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXD4P09016 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXD4P09016 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXD4P09016 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 HMGN1P6-201ENST00000438508 291 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 AC245291.3-201ENST00000443400 292 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 RN7SL216P-201ENST00000471607 298 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 MARK2P8-201ENST00000476069 952 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 PABPC1P1-201ENST00000506347 591 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXD4P09016 AC084026.1-201ENST00000522028 564 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXD4P09016 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXD4P09016 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXD4P09016 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC6.14□□□□□ -1.43
HOXD4P09016 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXD4P09016 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXD4P09016 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC6.14□□□□□ -1.43
HOXD4P09016 MIR4732-201ENST00000581873 76 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXD4P09016 NDUFB9P1-201ENST00000604683 510 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 AC111186.1-201ENST00000604684 130 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 AC004908.1-201ENST00000606572 541 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 AL591926.1-201ENST00000620542 217 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 AC005514.1-201ENST00000623521 208 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC6.14□□□□□ -1.43
HOXD4P09016 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXD4P09016 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
HOXD4P09016 AL021877.2-201ENST00000624442 10684 ntBASIC6.14□□□□□ -1.43
HOXD4P09016 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXD4P09016 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXD4P09016 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXD4P09016 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.13□□□□□ -1.43
HOXD4P09016 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXD4P09016 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms