Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 FRG2IP-201ENST00000563581 781 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 TEX46-202ENST00000566855 510 ntAPPRIS P2 TSL 2 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 CDRT8-201ENST00000579752 467 ntTSL 3 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 RN7SL473P-201ENST00000580341 299 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 VN1R78P-201ENST00000597393 564 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 OR7E94P-202ENST00000601375 790 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AC021171.1-201ENST00000603137 706 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 VN1R74P-201ENST00000613259 503 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 BX005040.2-201ENST00000620504 370 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AC022079.1-201ENST00000621546 602 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AC078883.4-201ENST00000623218 367 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AC007342.8-201ENST00000623278 678 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AP002967.1-201ENST00000624203 539 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 CDC27P2-201ENST00000425026 1922 ntBASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 NBR1-201ENST00000341165 4656 ntAPPRIS P3 TSL 1 (best) BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 ZNF878-201ENST00000547628 1734 ntAPPRIS P1 TSL 3 BASIC8.46□□□□□ -1.06
TRAIPQ9BWF2 ZNF674-207ENST00000523374 4073 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 SERPINB13-202ENST00000344731 3114 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 GMFB-209ENST00000616146 4125 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 ERAP1-202ENST00000443439 4805 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 NF1P7-201ENST00000612076 1530 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 TPD52-213ENST00000520527 2638 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 RNU4-51P-201ENST00000364206 140 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 RNU6-549P-201ENST00000384433 107 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 MIR525-201ENST00000384978 85 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 ATP5F1P2-201ENST00000398143 760 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 KRT18P52-201ENST00000404956 846 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL136131.1-201ENST00000406079 803 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC231533.2-201ENST00000419045 978 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 USP9YP11-201ENST00000427537 717 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL645936.2-201ENST00000430565 928 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 OR10G8-201ENST00000431524 1045 ntAPPRIS P1 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 MTCYBP42-201ENST00000444653 1130 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 LINC01105-205ENST00000450794 580 ntTSL 4 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC004815.1-201ENST00000484185 331 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC106774.2-201ENST00000510266 406 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC090835.1-201ENST00000515189 1024 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 BTF3P1-201ENST00000522014 495 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 DEFB130C-202ENST00000530001 230 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC087894.2-201ENST00000541797 462 ntTSL 4 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AL355922.4-201ENST00000555642 449 ntTSL 3 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC109460.4-201ENST00000561471 454 ntTSL 3 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC026254.4-201ENST00000581118 454 ntTSL 2 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 RPS28P1-201ENST00000604589 187 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 5S_rRNA.20-201ENST00000612104 118 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC116165.3-201ENST00000614524 400 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 SLC20A1P2-201ENST00000618036 966 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC110769.3-201ENST00000624567 1173 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 TRIM59-208ENST00000543469 4615 ntTSL 5 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 ZNF544-216ENST00000600044 2784 ntAPPRIS ALT2 TSL 4 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 LINC02128-205ENST00000641755 1334 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 RABEP1-201ENST00000341923 2490 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 AC011592.1-201ENST00000624647 3634 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 NF1P2-201ENST00000556855 2505 ntBASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC8.45□□□□□ -1.06
TRAIPQ9BWF2 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms