Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
COL5A1P20908 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 RPL23AP64-201ENST00000469465 435 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 AC007998.1-201ENST00000474156 672 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 AC006539.1-201ENST00000481419 501 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.31□□□□□ -1.4
COL5A1P20908 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.31□□□□□ -1.4
COL5A1P20908 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.31□□□□□ -1.4
COL5A1P20908 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.31□□□□□ -1.4
COL5A1P20908 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A1P20908 NPIPB1P-202ENST00000588786 828 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.31□□□□□ -1.4
COL5A1P20908 AC103703.1-201ENST00000634783 663 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC6.31□□□□□ -1.4
COL5A1P20908 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 AP003486.1-201ENST00000525716 3994 ntBASIC6.31□□□□□ -1.4
COL5A1P20908 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL5A1P20908 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A1P20908 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.3□□□□□ -1.4
COL5A1P20908 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC6.3□□□□□ -1.4
COL5A1P20908 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 AL354854.1-201ENST00000455940 1363 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL5A1P20908 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
COL5A1P20908 SNORA51.9-201ENST00000384295 124 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 PSMC1P2-201ENST00000423961 1204 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 CDK7P1-201ENST00000434574 693 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 RPL23AP19-201ENST00000436229 369 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL5A1P20908 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A1P20908 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A1P20908 RPS4XP14-201ENST00000493072 781 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 AC139272.1-201ENST00000505516 640 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 AC131392.1-201ENST00000506490 633 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.3□□□□□ -1.4
COL5A1P20908 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A1P20908 IGHV4-55-201ENST00000520889 368 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A1P20908 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC6.3□□□□□ -1.4
COL5A1P20908 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC6.3□□□□□ -1.4
COL5A1P20908 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL5A1P20908 AC004801.6-201ENST00000616571 978 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 OR1N1-202ENST00000619659 939 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC6.3□□□□□ -1.4
COL5A1P20908 AC073488.9-201ENST00000631601 754 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 AC129915.3-201ENST00000634128 948 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC6.3□□□□□ -1.4
COL5A1P20908 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.3□□□□□ -1.4
COL5A1P20908 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL5A1P20908 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL5A1P20908 LYARP1-201ENST00000436977 1501 ntBASIC6.3□□□□□ -1.4
COL5A1P20908 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL5A1P20908 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.3□□□□□ -1.4
COL5A1P20908 CCRL2-201ENST00000357392 1593 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC6.29□□□□□ -1.4
COL5A1P20908 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 AC023490.2-201ENST00000359859 470 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.29□□□□□ -1.4
COL5A1P20908 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 AC245452.2-201ENST00000435222 392 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 AC110602.1-201ENST00000437414 318 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 OR2L9P-201ENST00000444456 913 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 RBMY2AP-201ENST00000445405 1157 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 RBMY2CP-201ENST00000448575 1157 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 RBMY2DP-202ENST00000448881 1157 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 RBMY2BP-202ENST00000451071 1156 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 RPL5P14-201ENST00000494197 878 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 RNA5SP418-201ENST00000515951 117 ntBASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms